Locus 8185

Sequence ID 3L_DroMel_CAF1
Location 21,534,223 – 21,534,336
Length 113
Max. P 0.892786
window13393

overview

Window 3

Location 21,534,223 – 21,534,336
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.45
Mean single sequence MFE -22.05
Consensus MFE -9.75
Energy contribution -9.92
Covariance contribution 0.17
Combinations/Pair 1.22
Mean z-score -1.95
Structure conservation index 0.44
SVM decision value 0.97
SVM RNA-class probability 0.892786
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21534223 113 - 23771897
AUUACUCUAAAAAC--AGUGGACUUCAUACACAUACAUAUA--CAUAUGCUAGC-UACAGUUUUAAGGU--UCGUCUUUCCGACGGCUACUUUUGCCGUCUUAAAAAAUAAAUGAUUCCA
.....(((.(((((--.((((.((.((((............--..))))..)))-))).))))).))).--..........((((((.......)))))).................... ( -19.84)
>DroSec_CAF1 5646 117 - 1
AUUACUCCAAAAACUUAGUGGACUUCAUACACAUACAUAUGUAUGUAUGCUAGC-UACAGUUUUAACGU--UCGUCUUUCCGACGGCUUCUUUUGCCGUCUUAAAAACGAAACGAUUCCA
.........((((((..((((.((.((((((..(((....)))))))))..)))-)))))))))..(((--((((.(((..((((((.......))))))..))).))).))))...... ( -32.20)
>DroSim_CAF1 4656 108 - 1
AUUACUCCAAAAACUUAGUGGAUUUUAUACACAUACAUA--------UGCUAG--UACAGUUUUAACGU--UCGUCUUUCCGACGGCUUCUUUUGCUGUCUUAAAAACCAAACGAUUCCA
.........((((((..(((.........))).(((...--------.....)--)).))))))..(((--(.((.(((..((((((.......))))))..))).))..))))...... ( -16.90)
>DroEre_CAF1 23516 97 - 1
CAUAUCUUAAAAUCUUUGU-----------ACAUACA----------UGCUAGC-AACAUUUUCAACGAUGUCGGUUUUCCGACGGCUUGUCUUGCAGUCUUACAGUCCAAACGAUUA-A
..........((((((((.-----------((.....----------.(((.((-((......(((...((((((....))))))..)))..)))))))......)).)))).)))).-. ( -17.80)
>DroYak_CAF1 23846 110 - 1
CCCACUUUAAAAUCUUUAUGGAAUUCAUACGCAUACA----------CGUUUGCUAGCAUUUUCAACAUUGUCGUUGUUCCGACGGCUCGUUUUGCCGUCUUGAAGCCCUAACGAUUACA
..........((((.(((.((..((((...(((....----------....))).........((((......))))....((((((.......)))))).))))..))))).))))... ( -23.50)
>consensus
AUUACUCUAAAAACUUAGUGGACUUCAUACACAUACAUA________UGCUAGC_UACAGUUUUAACGU__UCGUCUUUCCGACGGCUUCUUUUGCCGUCUUAAAAACCAAACGAUUCCA
.................(((.........))).................................................((((((.......)))))).................... ( -9.75 =  -9.92 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:52 2006