| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,533,374 – 21,533,480 |
| Length | 106 |
| Max. P | 0.522130 |
| Location | 21,533,374 – 21,533,480 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.37 |
| Mean single sequence MFE | -32.75 |
| Consensus MFE | -10.24 |
| Energy contribution | -11.64 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.31 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21533374 106 + 23771897 CUUUGGGCAUUUUGGGGCACGCAAGCCUUAAAACCAUUGGCCAAUUAC--GACCAUUGGCCAGCGAUCCGG---------ACCGAGAGAUCUGCGCCCGUGAUUCACAUUCACACAC ....((((.(((((((((......)))))))))....((((((((...--....))))))))(((((((..---------.....).)))).))))))((((.......)))).... ( -38.50) >DroSec_CAF1 4805 106 + 1 CUUUGGGCACUUUGGGGCACGCAAGCCUUAAAACCAUUGGCCAAUUAC--GACCAUUGGCCAGCGAUCCGG---------ACCGAGAGAUCUGGGCCCGUGAUUCACAUUCGCACAC ....((((..((((((((......))))))))....(((((((((...--....)))))))))....((((---------(.(....).)))))))))((((.......)))).... ( -39.90) >DroSim_CAF1 3814 106 + 1 CUUUGGGCACUUUGGGGCACGCAAGCCUUAAAAACAUUGGCCAAUUAC--GACCAUUGGCCAGCGAUCCGG---------ACCGAGAGAUCUGGGCCCGUGAUUCACAUUCGCACAC ....((((..((((((((......))))))))..(.(((((((((...--....))))))))).)..((((---------(.(....).)))))))))((((.......)))).... ( -40.10) >DroEre_CAF1 22606 97 + 1 CUUUGGGCACUUUGGGGCACGCAAGCC------CCAUUGGCCAAUUAC--GAU------CCAGCAAUCCGGAGAUCUGGCACCAAGAGAUCUGGGCCCGUGAUUCA------CACAC .....(((.(..((((((......)))------)))..))))((((((--(.(------((........))).....(((.(((.(....))))))))))))))..------..... ( -34.30) >DroYak_CAF1 22925 88 + 1 CUUUGGGCACUUUCGGGCACGCAAGCA------CCAUUGGCCAAUUAC--GCU------CCAGCGAUCCGG---------ACCCAGAGAUCUGGGCCCGUGAUUCA------CACAC ..((((.((......((..(....)..------))..)).))))...(--((.------...)))((((((---------.(((((....))))).))).)))...------..... ( -27.90) >DroPer_CAF1 41222 85 + 1 CCUUGGGCACUUUCAGGCACGCAAGCA-------CUUUGCCCAAUUACCCGAACACA--------CACUAC---------ACUGAGUGAACUC------UGAUUGCCAUA--UUCAC .....((((...(((((...(((((..-------.))))).................--------((((..---------....))))...))------))).))))...--..... ( -15.80) >consensus CUUUGGGCACUUUGGGGCACGCAAGCC______CCAUUGGCCAAUUAC__GACCAUU__CCAGCGAUCCGG_________ACCGAGAGAUCUGGGCCCGUGAUUCACAUU__CACAC ....((((.......(((.(....)..............))).................((((...(((((..........))).))...))))))))................... (-10.24 = -11.64 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:51 2006