| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,531,596 – 21,531,702 |
| Length | 106 |
| Max. P | 0.992031 |
| Location | 21,531,596 – 21,531,702 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 62.14 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -10.02 |
| Energy contribution | -10.37 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.39 |
| Mean z-score | -3.13 |
| Structure conservation index | 0.39 |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.992031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21531596 106 + 23771897 -----UUAGA-----UAAAGGUUAUUAAAGCGGGACACAAGUAAGAAGUUUGCUUGUUAUAAGUUCAUUGGCAAGCCAAAAUAGUUUGUUUAUAGUGAACCUUUAAUUUUAAAGAG -----.....-----((((((((((((((((((((((((((((((...))))))))).....)))).((((....)))).......))))).))))).)))))))........... ( -23.50) >DroEre_CAF1 20851 116 + 1 ACUAACUAUACUAGGUACAGGUUAAUUAAGAGGGACAAAAGUAAGGAAUUCGCUUGUCAUAAGCAAAUUGGCAAGCGAAGAUAUAGUUUUUGUAAAGCACCUUUUACAUUAAAGAG .....................((((((((((((.(((((((..(....(((((((((((.........)))))))))))....)..)))))))......))))))).))))).... ( -27.90) >DroYak_CAF1 21095 96 + 1 ACUAUCUUUACAA--------------------GACAAAAAUAAGAAGUUCCCUUGUUAUAAGCACAUUGGCAACCAAAAAAGGAGCUCCUACAGAGCUCCUUUUACUUUAAAGAG ....((((((.((--------------------(......((((.(((....))).))))..((......))......(((((((((((.....))))))))))).))))))))). ( -25.20) >consensus ACUA_CUAUAC_A__UA_AGGUUA_U_AAG_GGGACAAAAGUAAGAAGUUCGCUUGUUAUAAGCACAUUGGCAAGCAAAAAUAGAGUUUUUAUAGAGCACCUUUUACUUUAAAGAG .....................................(((((((((.....((((((((.........)))))))).......((((((.....)))))).)))))))))...... (-10.02 = -10.37 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:50 2006