Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,527,230 – 21,527,321 |
Length | 91 |
Max. P | 0.552694 |
Location | 21,527,230 – 21,527,321 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.34 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -18.45 |
Energy contribution | -19.32 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.10 |
Mean z-score | -1.55 |
Structure conservation index | 0.81 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21527230 91 - 23771897 -----UGGAUUCUGGAUCCUGGAUUGUGAGUUCUGGUUUCCAGACUCCGACUUCGAAAAUUAAAAGCAAACAGCCAAAUAAGAGAUGUAAGCAUUU -----.(((.((((((..(..((........))..)..)))))).))).................((..(((.((......).).)))..)).... ( -22.40) >DroSec_CAF1 32612 91 - 1 -----UGGAUUCUGGAUCCUGGAUUGUGGGUUCUGGUUUCCAGACUACGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAAAUGUAAGCAUUU -----(((((((((((..(..((........))..)..))))))...((....))................)))))......(((((....))))) ( -21.30) >DroSim_CAF1 32985 96 - 1 GAUUCUGGAUUCUGGAUCCUGGAUUGUGGGUUCUGGUUUCCAGACUACGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAGAUGUAAGCAUUU ...((((((..(..((.(((.......))).))..)..))))))...((....))..........((..((((((......).)))))..)).... ( -25.50) >DroYak_CAF1 7673 91 - 1 -----UGGAUUGUGGGUUCUUGGUUGUGGGUUCUGGUUUCCAGACUCCGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAGAUGUAAGCAUUU -----...........(((..(((((.((((.((((...)))))))))))))..)))........((..((((((......).)))))..)).... ( -22.00) >consensus _____UGGAUUCUGGAUCCUGGAUUGUGGGUUCUGGUUUCCAGACUACGACUUCGAAAAUUAAAAGCAAACAUCCAAAUAAGAGAUGUAAGCAUUU .....((((.((((((..(..((........))..)..)))))).))))................((..((((((......).)))))..)).... (-18.45 = -19.32 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:47 2006