| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,525,880 – 21,525,975 |
| Length | 95 |
| Max. P | 0.581464 |
| Location | 21,525,880 – 21,525,975 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 96.32 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -22.61 |
| Energy contribution | -22.30 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21525880 95 + 23771897 GGCCGUGUCAUUAGCAGACAUGCUUAAUUAUGGCAUGGGUUUGGAAUCGUAUUGGCUUCAGAACAUGUUGAAAUAUCUCGUAUCAACACGUUUUC ..(((((((((.((((....)))).....)))))))))...((((..(.....)..))))((((.((((((.((.....)).)))))).)))).. ( -25.00) >DroSec_CAF1 31272 95 + 1 GGUCGUGUCAUUAGCAAACAUGCUUAAUUAUGGCAUGGUUUUGGAAUGGUAUUGGCUUCAGAACAUGUUGAAAUAUCUCGUAUCAACACGUUUUC ((((((..((((..(((.((((((.......))))))...))).))))..).)))))..(((((.((((((.((.....)).)))))).))))). ( -23.70) >DroSim_CAF1 31346 95 + 1 GGUCGUGUCAUUAGCAAACAUGCUUAAUUAUGGCAUGGUUUUGGAAUGGUAUUGGCUUCAGAACAUGUUGAAAUAUCUCGUAUCAACACGUUUUC ((((((..((((..(((.((((((.......))))))...))).))))..).)))))..(((((.((((((.((.....)).)))))).))))). ( -23.70) >DroYak_CAF1 6378 95 + 1 GGUCGUGUCAUUAGCAAACAUGCUUAAUUAUGGCAUGGUUUUGGAAUGGUAUUGGCUCUAGAACAUGUUGAAAUAUCUCAUAUCAACACGUUUUC ((((((..((((..(((.((((((.......))))))...))).))))..).)))))..(((((.((((((.((.....)).)))))).))))). ( -23.30) >consensus GGUCGUGUCAUUAGCAAACAUGCUUAAUUAUGGCAUGGUUUUGGAAUGGUAUUGGCUUCAGAACAUGUUGAAAUAUCUCGUAUCAACACGUUUUC ((((((((((((..((((((((((.......))))))..)))).))))))).)))))..(((((.((((((.((.....)).)))))).))))). (-22.61 = -22.30 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:44 2006