Locus 8175

Sequence ID 3L_DroMel_CAF1
Location 21,519,508 – 21,519,628
Length 120
Max. P 0.711708
window13376

overview

Window 6

Location 21,519,508 – 21,519,628
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -38.81
Consensus MFE -39.11
Energy contribution -38.67
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.54
Structure conservation index 1.01
SVM decision value 0.38
SVM RNA-class probability 0.711708
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21519508 120 + 23771897
UUUCCCAGUGCAGUACAUAGGCACACACAUAAUGCCUCCGGCCGUGGGCAACGAAAUUCGGGGAGUGGGCGAGACAAAUAUUAAAUCAAGCUGUGUAUUAUGUACUGGCCAUGCGGCACA
.....(((((((((((((((((.(((......((((..(....)..)))).((.....))....))).))((.............))...))))))))..)))))))(((....)))... ( -35.62)
>DroSec_CAF1 24783 120 + 1
UUUCCCAGUGCAGUACAUAGGCACACACAUAAUGCCCCCGGCCGUGGGCAACGAAAUUCGGGGAGUGGGCGAGACAAAUAUUAAAUCAAGCUGUGUACUAUGUACUGGCCAUGCGGCACA
..........((((((((((..((((.......((((((((...(.(....).)...)))))).)).(((..((...........))..))))))).))))))))))(((....)))... ( -40.40)
>DroSim_CAF1 24912 120 + 1
UUUCCCAGUGCAGUACAUAGGCACACACAUAAUGCCCCCGGCCGUGGGCAACGAAAUUCGGGGAGUGGGCGAGACAAAUAUUAAAUCAAGCUGUGUACUAUGUACUGGCCAUGCGGCACA
..........((((((((((..((((.......((((((((...(.(....).)...)))))).)).(((..((...........))..))))))).))))))))))(((....)))... ( -40.40)
>consensus
UUUCCCAGUGCAGUACAUAGGCACACACAUAAUGCCCCCGGCCGUGGGCAACGAAAUUCGGGGAGUGGGCGAGACAAAUAUUAAAUCAAGCUGUGUACUAUGUACUGGCCAUGCGGCACA
..........((((((((((..((((.......((((((((...(.(....).)...)))))).)).(((..((...........))..))))))).))))))))))(((....)))... (-39.11 = -38.67 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:36 2006