Locus 8170

Sequence ID 3L_DroMel_CAF1
Location 21,515,173 – 21,515,293
Length 120
Max. P 0.773674
window13359

overview

Window 9

Location 21,515,173 – 21,515,293
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -31.03
Consensus MFE -29.39
Energy contribution -29.50
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.95
SVM decision value 0.54
SVM RNA-class probability 0.773674
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21515173 120 - 23771897
ACACAAAUGAGAACCAAGUCACAGCUUCGAAUUGGCCACUCCUUCGGCCGAGAUGAUCAUCAUCGUGCUGUAAUAUUACAAAUCCAAGAAAAGUGGAGUGAUGCAACCGACAUUGGAGUG
.............((((((((((((..(((.((((((........))))))(((....))).))).)))))..((((((...((((.......)))))))))).....))).)))).... ( -33.70)
>DroSec_CAF1 20290 120 - 1
ACACAAAUAAGAAGCAAGUCACAGCUUCGAAUUGGCCACUCCUUCGGCCGAAAUGAUCCUCAUCAUGCUGUAAUAUUACAAAUCCAAGAAAAGUGGAGUGAUGCAACCGACAUUGGAGUG
..............(((((((((((......((((((........)))))).(((((....))))))))))..((((((...((((.......)))))))))).....))).)))..... ( -28.00)
>DroSim_CAF1 20400 120 - 1
ACACAAAUAAGAACCAAGUCACAGCUUCGAAUUGGCCACUCCUUCGGCCGAAAUGAUCAUCAUCAUGCUGUAAUAUUACAAAUCCAAGAAAAGUGGAGUGAUGCAACCGACAUUGGAGUG
.............((((((((((((......((((((........)))))).(((((....))))))))))..((((((...((((.......)))))))))).....))).)))).... ( -31.40)
>consensus
ACACAAAUAAGAACCAAGUCACAGCUUCGAAUUGGCCACUCCUUCGGCCGAAAUGAUCAUCAUCAUGCUGUAAUAUUACAAAUCCAAGAAAAGUGGAGUGAUGCAACCGACAUUGGAGUG
.............((((((((((((......((((((........)))))).(((((....))))))))))..((((((...((((.......)))))))))).....))).)))).... (-29.39 = -29.50 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:20 2006