| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,512,803 – 21,512,906 |
| Length | 103 |
| Max. P | 0.662156 |
| Location | 21,512,803 – 21,512,906 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.24 |
| Mean single sequence MFE | -22.14 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.82 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662156 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21512803 103 - 23771897 UCACCCUAAACUAGACAAAUACG---UAUAC--------------GUCUAUCUGUUCGAACUAAUUGGGGGUGUAAUAGCGCUAUUAACCGCUCCGAGUGACAACACCCCUCAUUCGUUC ...........(((((.......---.....--------------))))).......((((.(((.((((((((.....((((.............))))...)))))))).))).)))) ( -23.42) >DroSec_CAF1 17900 115 - 1 UCACCCUAAACUAGACAAAUACCCACUAUCCGUCUACCCACUAUCGUCUA-----UCGAACUAAUUGGGGGUGUAAUAGCGCUAUUAACCGCUCCGAGUGACAACACCCCUCAUUCGCUC .((((((....(((((..(((.....)))..))))).......(((....-----.)))........))))))....((((........)))).(((((((.........)))))))... ( -22.80) >DroSim_CAF1 17534 107 - 1 UCACCCUAAACUAGACAAAUACCCACCAU-------------AUCGUCUAUCUGUUCGAACUAAUUGGGGGUGUAAUAGCGCUAUUAACCGCUCCGAGUGACAACACCCCUCAUUCGCUC ..................((((((.(((.-------------.(((.(.....)..)))......)))))))))...((((........)))).(((((((.........)))))))... ( -20.20) >consensus UCACCCUAAACUAGACAAAUACCCACUAU_C___________AUCGUCUAUCUGUUCGAACUAAUUGGGGGUGUAAUAGCGCUAUUAACCGCUCCGAGUGACAACACCCCUCAUUCGCUC .((((((....(((((.............................)))))......(((.....)))))))))....((((........)))).(((((((.........)))))))... (-18.82 = -18.82 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:09 2006