Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,512,563 – 21,512,683 |
Length | 120 |
Max. P | 0.703012 |
Location | 21,512,563 – 21,512,683 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -26.53 |
Energy contribution | -26.20 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.09 |
Mean z-score | -1.96 |
Structure conservation index | 0.91 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21512563 120 + 23771897 CCCCUAAUUAUAUACAAUGUAUGUAAUACGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU ...............(((((((((.....((.((((((..((.((.((((((......)))))).)).))..)))))).))((((..((....))..)))).......)))))))))... ( -27.10) >DroSec_CAF1 17660 120 + 1 CCCCUAAUUAUAUACAAUGUACGUAGUAUGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU ........(((((...(((((((((((((..........)))))))))))))...((((.((..(((......(((((....))))).)))...))))))........)))))....... ( -30.00) >DroSim_CAF1 17294 120 + 1 CCCCUAAUUAUAUACAAUGUAUGUAGUGUGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU ...............(((((((((.(((((.((.((((..((.((.((((((......)))))).)).))..))))))))))).((((..........))))......)))))))))... ( -30.30) >consensus CCCCUAAUUAUAUACAAUGUAUGUAGUAUGUCCUAAUAAGUGCUAUGUGCAUAUCCCGGUGCACUUGUCAAGUGUUGGCACACCGACUCAACCGGCCCGGUCAUUAAAAUAUACAUUUUU ........(((((...(((((((((((((..........)))))))))))))...((((.((..(((......(((((....))))).)))...))))))........)))))....... (-26.53 = -26.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:08 2006