Locus 8161

Sequence ID 3L_DroMel_CAF1
Location 21,507,418 – 21,507,536
Length 118
Max. P 0.840333
window13331

overview

Window 1

Location 21,507,418 – 21,507,536
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 69.86
Mean single sequence MFE -25.38
Consensus MFE -14.56
Energy contribution -13.24
Covariance contribution -1.32
Combinations/Pair 1.43
Mean z-score -1.67
Structure conservation index 0.57
SVM decision value 0.75
SVM RNA-class probability 0.840333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21507418 118 + 23771897
--UGGCCUACUCGGAAUAAAAUCUGUAAGCCGGUAAACAAGUCCAAAGGCAAUGAUGCCUGACGAUUUGUUUUAUCAGAUUUCAAUUUGUCCUCGAUUUAAAACCCUACAACAGCACCUA
--.(((.(((..(((......)))))).)))((((((((((((...(((((....)))))...)))))))))...(((((....)))))..........................))).. ( -25.50)
>DroPse_CAF1 36724 107 + 1
CGAGGCCUA------UGAAUGUCUGAAAG-------AUAAAAUGAAAUGCAAUGAUGCACAACAUUUUGCGUACUUGGGCUUUACAUUGGCUUCAUUUGAAGAUUGUAGUAAUGCAACAA
.((((((.(------((((.(((..(..(-------.(((((((...((((....))))...))))))))....)..))).)).))).)))))).........(((((....)))))... ( -28.20)
>DroSec_CAF1 12894 118 + 1
--CGACCUAAUCGGAAUAAAAUCUGUAAGCCGGUAAACAAGUCCAAAGGCAAUGAUGCCUGACGAUUUGUUUUAUCAGAUUUCAAUUUGUCCUCGAUUUAAAACCCUACAACAGCACCUA
--......((((((....((((.((....(.((((((((((((...(((((....)))))...)))))).)))))).)....))))))....))))))...................... ( -22.50)
>DroSim_CAF1 12759 118 + 1
--CGACCUAAUCGGAAUAAAAUCUGUAAGCCGGUAAACAAGUCCAAAGGCAAUGAUGCCUGACGAUUUGUUUUAUCAGAUUUCAAUUUGUCCUCGAUUUAAAACCCUACAACAGCACCUA
--......((((((....((((.((....(.((((((((((((...(((((....)))))...)))))).)))))).)....))))))....))))))...................... ( -22.50)
>DroPer_CAF1 31538 107 + 1
CGUGGCCUA------UGAAAGUCUGAAAG-------AUAAAAUGAAAUGCAAUGAUGCACAACAUUUUGCGUACUUGGGCUUUACAUUGGCUUCAUUUGAAGAUUGUAGUAAUGCAACAA
.(.((((.(------((((((((..(..(-------.(((((((...((((....))))...))))))))....)..)))))).))).)))).).........(((((....)))))... ( -28.20)
>consensus
__CGGCCUA_UCGGAAUAAAAUCUGUAAGCCGGUAAACAAGUCCAAAGGCAAUGAUGCCUGACGAUUUGUUUUAUCAGAUUUCAAUUUGUCCUCGAUUUAAAACCCUACAACAGCACCUA
..................(((((((.........(((((((((...(((((....)))))...)))))))))...)))))))...................................... (-14.56 = -13.24 +  -1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:55 2006