Locus 816

Sequence ID 3L_DroMel_CAF1
Location 2,488,896 – 2,488,987
Length 91
Max. P 0.999912
window1255 window1256

overview

Window 5

Location 2,488,896 – 2,488,987
Length 91
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 93.46
Mean single sequence MFE -21.19
Consensus MFE -17.37
Energy contribution -16.89
Covariance contribution -0.48
Combinations/Pair 1.14
Mean z-score -2.96
Structure conservation index 0.82
SVM decision value 2.87
SVM RNA-class probability 0.997506
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2488896 91 + 23771897
AUAAUAAUUGGCUAGUCGCAUUAAUUGCUAAGUGUAGUGUUUCUUUUAUAAA--CCUUCACAAUACUUUUUGCGCUGACCAAUUCCGUUUUUA
.....((((((.(((.((((.........((((((.(((.............--....))).))))))..))))))).))))))......... ( -17.23)
>DroSec_CAF1 112337 91 + 1
AUAAUAAUUGGCUAGUCGCAUUAAUUGCUAAGUGUAGUGUUUCUUCUAUAAA--CCCUCACAAUACUUUUUGCGCUAACCAAUUCUGUUUUUA
.....((((((.(((.((((.........((((((.(((.............--....))).))))))..))))))).))))))......... ( -17.53)
>DroSim_CAF1 107277 91 + 1
AUAAUAAUUGGCUAGUCGCAUUAAUUGCUAAGUGUAGUGUUUCUUCUAUGAA--CCCUCACAAUACUUUUUGCGCUGACCAAUUCUGUUUUUA
.....((((((.(((.((((.........((((((.(((.(((......)))--....))).))))))..))))))).))))))......... ( -19.40)
>DroEre_CAF1 112562 91 + 1
AUAAUAAUUGGCUAGUCGCAUUAAUUGCUAAGUGUAGUGUUUCUUCUAUAAA--CCUUCGCAAUACUUUUUGCGCUGGCCAAUUCUGUUUUUA
.....((((((((((.((((...(((((.((((((((........)))))..--.))).)))))......))))))))))))))......... ( -27.00)
>DroYak_CAF1 110615 93 + 1
AUAAUAAUUGGCUAGUCGCAUUAAUUGCCAAGUGUAGUGUUUCUUCUAUACUUUUCUUCACAAUACUUUUUGCGCUGGCCGAUUCUGUUUUUA
.....((((((((((.((((...((((..(((...(((((.......)))))...)))..))))......))))))))))))))......... ( -24.80)
>consensus
AUAAUAAUUGGCUAGUCGCAUUAAUUGCUAAGUGUAGUGUUUCUUCUAUAAA__CCUUCACAAUACUUUUUGCGCUGACCAAUUCUGUUUUUA
.....((((((.(((.((((.........((((((.(((...................))).))))))..))))))).))))))......... (-17.37 = -16.89 +  -0.48)

alignment

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secondary structure

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dotplot

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Window 6

Location 2,488,896 – 2,488,987
Length 91
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 93.46
Mean single sequence MFE -20.18
Consensus MFE -18.38
Energy contribution -17.94
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -2.79
Structure conservation index 0.91
SVM decision value 4.51
SVM RNA-class probability 0.999912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2488896 91 - 23771897
UAAAAACGGAAUUGGUCAGCGCAAAAAGUAUUGUGAAGG--UUUAUAAAAGAAACACUACACUUAGCAAUUAAUGCGACUAGCCAAUUAUUAU
.........((((((..((((((....((...(((.(((--(((.......)))).)).)))...))......)))).))..))))))..... ( -19.30)
>DroSec_CAF1 112337 91 - 1
UAAAAACAGAAUUGGUUAGCGCAAAAAGUAUUGUGAGGG--UUUAUAGAAGAAACACUACACUUAGCAAUUAAUGCGACUAGCCAAUUAUUAU
.........((((((((((((((....((...(((.(((--(((.......)))).)).)))...))......)))).))))))))))..... ( -22.70)
>DroSim_CAF1 107277 91 - 1
UAAAAACAGAAUUGGUCAGCGCAAAAAGUAUUGUGAGGG--UUCAUAGAAGAAACACUACACUUAGCAAUUAAUGCGACUAGCCAAUUAUUAU
.........((((((..((((((....((...(((((..--(((......)))...)).)))...))......)))).))..))))))..... ( -19.40)
>DroEre_CAF1 112562 91 - 1
UAAAAACAGAAUUGGCCAGCGCAAAAAGUAUUGCGAAGG--UUUAUAGAAGAAACACUACACUUAGCAAUUAAUGCGACUAGCCAAUUAUUAU
.........(((((((.((((((......(((((..(((--(...(((........))).)))).)))))...)))).)).)))))))..... ( -21.60)
>DroYak_CAF1 110615 93 - 1
UAAAAACAGAAUCGGCCAGCGCAAAAAGUAUUGUGAAGAAAAGUAUAGAAGAAACACUACACUUGGCAAUUAAUGCGACUAGCCAAUUAUUAU
.............(((.((((((......(((((.(((...(((...........)))...))).)))))...)))).)).)))......... ( -17.90)
>consensus
UAAAAACAGAAUUGGUCAGCGCAAAAAGUAUUGUGAAGG__UUUAUAGAAGAAACACUACACUUAGCAAUUAAUGCGACUAGCCAAUUAUUAU
.........(((((((.((((((......(((((.(((.......................))).)))))...)))).)).)))))))..... (-18.38 = -17.94 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:54 2006