Locus 8159

Sequence ID 3L_DroMel_CAF1
Location 21,506,163 – 21,506,282
Length 119
Max. P 0.943853
window13327

overview

Window 7

Location 21,506,163 – 21,506,282
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -27.75
Consensus MFE -24.91
Energy contribution -25.57
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.73
Structure conservation index 0.90
SVM decision value 1.34
SVM RNA-class probability 0.943853
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21506163 119 - 23771897
AACGUCGCUAAUUUGAUUUUCUAAGCACUGCAGCAACUGUUGGAAGUCUCUCUGCAAGCAAAAC-AUUCCUAUAAAUAAAUUCCUUAAGUGCAUUUCGAUUUCCUUACGGUUGCUGCUUU
......(((..............)))...(((((((((((.(((((((....((((........-........................))))....)))))))..)))))))))))... ( -30.39)
>DroSec_CAF1 11603 120 - 1
AACGUCGCUAAUUUGAUUUUCUAAGCCUUGCAGCAACUGUUGAAAGUCUCUCUGCAAGUAAAACAAAUCCUAUAAAUAAAUUUCUUAAGUGCACUUAUAUUUCCUUACGGUUGCUGCUUU
......(((..............)))...(((((((((((.((((.......((((..(((.......................)))..))))......))))...)))))))))))... ( -23.86)
>DroSim_CAF1 11469 120 - 1
AACGUCGCUAAUUUGAUUUUCUAAGCCCUGCAGCAACUGUUGGAAGUCUCUCUGCAAGUAAAAAAAAUCCUAUAAAUAAAUUUCUUAAGUGCACUUAUAUUUCCUUACGGUUGCUGCUUU
......(((..............)))...(((((((((((.((((((.....((((..(((.(((...............))).)))..)))).....))))))..)))))))))))... ( -29.00)
>consensus
AACGUCGCUAAUUUGAUUUUCUAAGCCCUGCAGCAACUGUUGGAAGUCUCUCUGCAAGUAAAACAAAUCCUAUAAAUAAAUUUCUUAAGUGCACUUAUAUUUCCUUACGGUUGCUGCUUU
......(((..............)))...(((((((((((.((((((.....((((..(((.......................)))..)))).....))))))..)))))))))))... (-24.91 = -25.57 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:51 2006