Locus 8156

Sequence ID	3L_DroMel_CAF1
Location	21,497,677 – 21,497,788
Length	111
Max. P	0.777083

overview

Window 4

Location	21,497,677 – 21,497,788
Length	111
Sequences	3
Columns	111
Reading direction	reverse
Mean pairwise identity	90.30
Mean single sequence MFE	-42.61
Consensus MFE	-38.02
Energy contribution	-37.47
Covariance contribution	-0.55
Combinations/Pair	1.09
Mean z-score	-1.96
Structure conservation index	0.89
SVM decision value	0.55
SVM RNA-class probability	0.777083
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21497677 111 - 23771897
GGUGGCAUGGGGGAGCUACUCCUGGGCUCUCCUGGGUCUAAGUAGGCAGAUAACUGAUUUACUGGAUUUCUAGUUACCGUACUGCUUGCGAACUGGGAGGCUGCUCCAAAU
.......(((((.(((..(((((((((((....))))))..((((((((.((........(((((....))))).....)))))))))).....)))))))).)))))... ( -40.92)
>DroSec_CAF1 3026 108 - 1
GAUGGCAUGGGGGAGCU---CCAUGGCUCUCCUGGGUCCGAGUAGGCAGAUAACUGAUUUAGUGGCUUUCUGGUUACCGAACUGCUCGCGAGCUCGGAGGCUGCUCCAAAU
..((((((((((...))---)))))((.((((.((.(((((((((.(((....))).((..((((((....))))))..))))))))).)).)).))))))....)))... ( -42.00)
>DroSim_CAF1 2889 107 - 1
GAUGGCAUGGGGGAGCU---CC-UGGCUCUCCUGGGUCCGAGUAGGCAGAUAACUGAUUUAGUGGUUUUCUGGUUACCGAACUGCUCGCGAGCUGGGAGGCUGCUCCAAAU
.......(((((.((((---((-..((((.(..((((.((.((((.((((.((((........)))).)))).)))))).))).)..).))))..))).))).)))))... ( -44.90)
>consensus
GAUGGCAUGGGGGAGCU___CC_UGGCUCUCCUGGGUCCGAGUAGGCAGAUAACUGAUUUAGUGGAUUUCUGGUUACCGAACUGCUCGCGAGCUGGGAGGCUGCUCCAAAU
...........(((((........(((.(((((((.(((((((((...(.(((((((...........)).))))).)...))))))).)).))))))))))))))).... (-38.02 = -37.47 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:48 2006