Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,497,281 – 21,497,372 |
Length | 91 |
Max. P | 0.947348 |
Location | 21,497,281 – 21,497,372 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 97.80 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -20.59 |
Energy contribution | -20.37 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.47 |
Structure conservation index | 0.95 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21497281 91 - 23771897 AACUGGCUUAAUAAAUCCGGCCAAGAUGCUACAGUCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA ...((((.........((((....(((......)))....))))...(((((.(((......)))..)))))....))))........... ( -18.80) >DroSec_CAF1 2628 91 - 1 AACUGGCUUAAUAAAUCCGGCCAAGAUGCUGCUGCCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA ...(((((..........))))).((.((((((((((....))))).(((((.(((......)))..)))))))).))....))....... ( -23.00) >DroSim_CAF1 2491 91 - 1 AACUGGCUUAAUAAAUCCGGCCAAGAUGCUGCUGCCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA ...(((((..........))))).((.((((((((((....))))).(((((.(((......)))..)))))))).))....))....... ( -23.00) >consensus AACUGGCUUAAUAAAUCCGGCCAAGAUGCUGCUGCCGACACCGGCAACCACAAUAUAACUAAAUACCUGUGGGCAUGCCACUUCAAAUUUA ...(((((..........)))))..((((....((((....))))..(((((.(((......)))..)))))))))............... (-20.59 = -20.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:46 2006