Locus 8152

Sequence ID 3L_DroMel_CAF1
Location 21,491,655 – 21,491,769
Length 114
Max. P 0.625544
window13318

overview

Window 8

Location 21,491,655 – 21,491,769
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 97.54
Mean single sequence MFE -30.42
Consensus MFE -27.26
Energy contribution -27.70
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.32
Structure conservation index 0.90
SVM decision value 0.19
SVM RNA-class probability 0.625544
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21491655 114 - 23771897
AUAACAAAGAAAGUGAGAUCAAGUCUGCGCGAUCGUGGAUCGUCGAAUGGAAAAGAAGCUUCGCAUGUGUGCGUGGUUAAUUCGAAAGAAACUUUUUUGCUUUUGGCCGCGGAA
.......................((((((.((((...))))((((((.(.((((((((((.((((....)))).))))..(((....)))..)))))).).)))))))))))). ( -30.50)
>DroSec_CAF1 13523 114 - 1
AUAACAAAGAAAGUGAGAUCAAGUCUGCGCGAUCGUGGAUCGUCGAAUGGAAAAGAAGCUUCGCAUGUGUGCGUGGUUAAUUCGAAAGAAACUUUUUUGCUUUUGGCCGCGGAA
.......................((((((.((((...))))((((((.(.((((((((((.((((....)))).))))..(((....)))..)))))).).)))))))))))). ( -30.50)
>DroSim_CAF1 14889 114 - 1
AUAACAAAGAAAGUGAGAUCAAGUCUGCGCGAUCGUGGAUCGUCGAAUGGAAAAGAAGCUUCGCAUGUGUGCGUGGUUAAUUCGAAAGAAACUUUUUUGCUUUUGGCCGCGGAA
.......................((((((.((((...))))((((((.(.((((((((((.((((....)))).))))..(((....)))..)))))).).)))))))))))). ( -30.50)
>DroEre_CAF1 13592 114 - 1
AUAACAAAGAAAGUGAGAUCAAGUCUGCGAGAUCGUGGAUAGUCGAAUGGAAAAGAAGCUUCGCAUGUAUGCGUGAUUAAUUCGAAAGAAACUUUUUUGCUUUUGGCCGCGGAA
............(((.......(((..((....))..))).((((((.((.(((((((...((((....)))).......(((....))).))))))).))))))))))).... ( -26.40)
>DroYak_CAF1 16941 114 - 1
AUAACAAAGAAAGUGAGAUCAAGUCUUCGAGAUCGUGGAUCGUCGAGUGGAAAAGAAGCUUCGCAUGUAUGCGUGGUUAAUUCGAAAGAAACUUUUUUGCUUUUGGCCGCGGAA
....(.((((...((....))..)))).)...((((((.(((..(((..((((((.((((.((((....)))).))))..(((....))).))))))..))).))))))))).. ( -34.20)
>consensus
AUAACAAAGAAAGUGAGAUCAAGUCUGCGCGAUCGUGGAUCGUCGAAUGGAAAAGAAGCUUCGCAUGUGUGCGUGGUUAAUUCGAAAGAAACUUUUUUGCUUUUGGCCGCGGAA
.......................((((((.((((...))))((((((.(.((((((((((.((((....)))).))))..(((....)))..)))))).).)))))))))))). (-27.26 = -27.70 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:38 2006