Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,488,750 – 21,488,857 |
Length | 107 |
Max. P | 0.999647 |
Location | 21,488,750 – 21,488,857 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 97.94 |
Mean single sequence MFE | -27.88 |
Consensus MFE | -23.22 |
Energy contribution | -23.02 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.77 |
Structure conservation index | 0.83 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21488750 107 + 23771897 CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUAC .....................(((...(((((.(((((((((.(((.(((....))).))).........))))))))).....((((....))))))))).))).. ( -26.30) >DroSec_CAF1 10548 107 + 1 CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGAGAUUUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGC ......................(((.((((((.((((((((.((((......))))(((((.....))))))))))))).....((((....)))))))).)).))) ( -27.80) >DroSim_CAF1 11943 107 + 1 CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGC ......................(((.((((((.(((((((((.(((.(((....))).))).........))))))))).....((((....)))))))).)).))) ( -26.60) >DroEre_CAF1 10578 107 + 1 CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGACGGUGAUGCCACCCAAGUUGC ......................((((((((((((((........))))....((((((((((...(((.....))))))))))))).((.....)))))).)))))) ( -27.90) >DroYak_CAF1 12440 107 + 1 CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGUUGC ......................((((((((((.(((((((((.(((.(((....))).))).........))))))))).....((((....)))))))).)))))) ( -30.80) >consensus CUUUCACAAAAAAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGC .....................(((...(((((.(((((((((.((..(((....)))..)).........))))))))).....((((....))))))))).))).. (-23.22 = -23.02 + -0.20)
Location | 21,488,750 – 21,488,857 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 97.94 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -29.30 |
Energy contribution | -28.94 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -2.37 |
Structure conservation index | 0.98 |
SVM decision value | 3.83 |
SVM RNA-class probability | 0.999647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21488750 107 - 23771897 GUAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG ((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -28.80) >DroSec_CAF1 10548 107 - 1 GCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAAAUCUCGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG ((((((.(((((((......)))......((((((((..............((((......))))))))))))..))))))))))((..((((....))))..)).. ( -30.83) >DroSim_CAF1 11943 107 - 1 GCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG ((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -30.80) >DroEre_CAF1 10578 107 - 1 GCAACUUGGGUGGCAUCACCGUCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG ((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -28.10) >DroYak_CAF1 12440 107 - 1 GCAACUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG ((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. ( -30.80) >consensus GCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUUUUUUGUGAAAG ((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))((..((((....))))..)).. (-29.30 = -28.94 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:37 2006