| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,487,288 – 21,487,385 |
| Length | 97 |
| Max. P | 0.900856 |
| Location | 21,487,288 – 21,487,385 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -17.98 |
| Consensus MFE | -16.84 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.900856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21487288 97 - 23771897 CAAAAGUCGGGACACCGUUCGUUUAAUAGAUCUGCCUCCUCUAGGCAAAAGCCGAACCCGACAUCAAAACUAAAAGACACACUAAACA---GAAAGCCCA .....((((((.....(.((........)).)(((((.....))))).........))))))..........................---......... ( -17.70) >DroPse_CAF1 15984 96 - 1 ----AGUCGGGACACCGUUCGUUUAAUAAGUCUGCCUCCUCAAGGCAAAUUAAGAACCCGACUAUAAAACUAAAAGACACAUUUAACAGUAGAAAAUCCA ----(((((((((.......))......(((.(((((.....))))).))).....)))))))..................................... ( -17.00) >DroSec_CAF1 9087 97 - 1 CAAAAGUCGGGACUCCGUUCGUUUAAUAGAUCUGCCUCCUCUAGGCAAAAGCCGAACCCGACAUCAAAACUAAAAGACACACUAAACA---GAAAGUCCA .....((((((.....(.((........)).)(((((.....))))).........)))))).............(((...((....)---)...))).. ( -18.10) >DroSim_CAF1 10477 97 - 1 CAAAAGUCGGGACUCCGUUCGUUUAAUAGAUCUGCCUCCUCUAGGCAAAAGCCGAACCCGACAUCAAAACUAAAAGACACACUAAACA---GAAAGUCCA .....((((((.....(.((........)).)(((((.....))))).........)))))).............(((...((....)---)...))).. ( -18.10) >DroEre_CAF1 9154 97 - 1 CAAAAGUCGGGAAACCGUUCGUUUAAUAGAUCUGCCUCCUCUAGGCAAAAGCCGAACCCGACAUCAAAACUAAAAGACACUCUGAACA---GAAAGCCCA .....((((((((((.....))))........(((((.....))))).........))))))..................(((....)---))....... ( -18.60) >DroYak_CAF1 10956 97 - 1 CAAAAGUCGGGAUACCGUUCGUUUAACAGAUCUGCCUCCUCUAGGCAAAAGCCGAACCCGACAUCAAAACUAAAAGACACCCUGAGCA---GAAAGCCCA .....((((((.....(((.....))).....(((((.....))))).........)))))).....................(.((.---....)).). ( -18.40) >consensus CAAAAGUCGGGACACCGUUCGUUUAAUAGAUCUGCCUCCUCUAGGCAAAAGCCGAACCCGACAUCAAAACUAAAAGACACACUAAACA___GAAAGCCCA .....((((((.....(.((........)).)(((((.....))))).........))))))...................................... (-16.84 = -16.87 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:30 2006