| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,485,742 – 21,485,854 |
| Length | 112 |
| Max. P | 0.532769 |
| Location | 21,485,742 – 21,485,854 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 72.00 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -13.87 |
| Energy contribution | -13.21 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21485742 112 - 23771897 GGUAACAUGAAAAUGU-ACAAUUUUA--UU---UACCUAUUUUACAGGACAAGCAAGUAAAAAAAAGUGAACGUACUAGAUUUCGCGAGGAGGCAGACAUGCUGAAGAAACUUCAGCA (((((.((((((....-....)))))--))---))))..((((((..(.....)..))))))..........((.((...((((....))))..)))).((((((((...)))))))) ( -22.10) >DroPse_CAF1 14546 94 - 1 -----------------------UUAACCC-CCCCUCUGUUUUGUAGGAUAAGCAAGUGAAGAAAAGCGAACGCACUAGAUUCCGUGAGGAGGCAGACAUGUUAAAGAAACUUCAGCA -----------------------.......-..((((......).)))....((...(((((....((....)).((...((((....))))..))..............))))))). ( -16.80) >DroEre_CAF1 7629 114 - 1 GUUAACUUUAAAAUGU-ACAAUUUUAUGUU---UACCUAUUUUACAGGACAAGCAAGUAAAGAAAAGUGAACGUACCAGAUUCCGCGAGGAGGCAGACAUGCUGAAGAAACUUCAGCA ............((((-.......((((((---(((...((((((..(.....)..))))))....)))))))))...(.((((....)))).)..))))(((((((...))))))). ( -26.90) >DroWil_CAF1 57527 103 - 1 ----------AAAUUUAACUAUCUGA--UUA--UAUUC-AAUUCAAGGAUAAGCAAGUGAAAAAGAGCGAACGCACUAGAUUCCGCGAGGAGGCAGAUAUGUUAAAGAAGUUGCAACA ----------...((((((((((((.--...--(((((-.......)))))............((.((....)).))...((((....)))).)))))).))))))............ ( -19.80) >DroYak_CAF1 9428 114 - 1 GUUAACUUUAAAAUGU-AAAAUUUUUUGUC---UAUCGGUGUUACAGGACAAGCAAGUAAAAAAAAGUGAACGUACCAGAUUCCGCGAGGAGGCAGACAUGCUGAAGAAACUUCAGCA ................-.........((((---(..(((((((((..(.....)..))))......(....).))))....(((....))))..)))))((((((((...)))))))) ( -25.70) >DroPer_CAF1 8055 92 - 1 -----------------------UUAACCU---CCUCUGUUUUGUAGGAUAAGCAAGUGAAGAAAAGCGAACGCACUAGAUUCCGUGAGGAGGCAGACAUGUUGAAGAAACUUCAGCA -----------------------....(((---(((((((((........))))).(.(((.....((....))......))))..)))))))......((((((((...)))))))) ( -23.40) >consensus __________AAAUGU_ACAAUUUUA__UU___UAUCUGUUUUACAGGACAAGCAAGUAAAAAAAAGCGAACGCACUAGAUUCCGCGAGGAGGCAGACAUGCUGAAGAAACUUCAGCA ....................................................((..(((..............)))....((((....)))))).....((((((((...)))))))) (-13.87 = -13.21 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:27 2006