Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,478,168 – 21,478,269 |
Length | 101 |
Max. P | 0.677832 |
Location | 21,478,168 – 21,478,269 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 80.99 |
Mean single sequence MFE | -30.84 |
Consensus MFE | -21.87 |
Energy contribution | -21.35 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.40 |
Mean z-score | -1.49 |
Structure conservation index | 0.71 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21478168 101 + 23771897 --------------UGGCGCAGUGCCUUUUGGAACUUUUCGUAUUCCACAUAAUGUUUAAGACGCAGCUCGUCCUCUUCGAUGAGUUGUCUCUGACGCAACAGCAACAGCCGUUG --------------.(((....(((....(((((.........))))).....(((...(((.((((((((((......)))))))))).)))...)))...)))...))).... ( -30.30) >DroVir_CAF1 6235 115 + 1 AUUACUGCUUACAUUGGCGCAGUGCCUUUUGAAACUUUUCGUAUUCCACAUAAUGCUUAAGGCGCAGCUCGUCCUCUUCAAUCAGCUGCCGUUGGCGCAGCAGCAGCAGUCGCUG ....(((((.......((((...(((((..(((....)))(((((......)))))..)))))((((((.((........)).)))))).....)))))))))((((....)))) ( -31.91) >DroPse_CAF1 6518 115 + 1 AAUAAUUCUUACAUUGGCGCAGAGAUUUUUGAAAUUUUUCGUAUUCCACAUAGUGUUUCAAACGCAGUUCGUCCUCUUCGAUGAGCUGUCUCUGGCGCAACAGCAACAGCCGCUG ................((((((((...((((((((.....((.....)).....)))))))).((((((((((......)))))))))))))).))))..((((.......)))) ( -33.00) >DroEre_CAF1 178 115 + 1 AGCAGAACAUACAUUGGCGCAGUGCCUUUUGAAACUUUUCAUAUUCCACAUAAUGUUUAAGCCGCAGCUCGUCCUCUUCGAUGAGUUGUCUCUGACGCAAGAGCAACAGCCGUUG ...........((.((((...(((.....((((....)))).....)))....((((......((((((((((......))))))))))((((......)))).)))))))).)) ( -27.10) >DroAna_CAF1 181 115 + 1 ACUUGAGCUUACAUUGGCGCAGUGCCUUCUGAAACUUUUCGUAUUCCACAUAAUGUUUUAGGCGCAACUCGUCCUCCUCGAUGAGUUGUCUUUGGCGCAACAAUAACAGCCGUUG ...((.(((......))).))(((((.((((((((.((..((.....))..)).)))))))).((((((((((......))))))))))....)))))................. ( -30.80) >DroPer_CAF1 2 105 + 1 ----------ACAUUGGCGCAGAGAUUUUUGAAAUUUUUCGUAUUCCACAUAGUGUUUCAAACGCAGUUCGUCCUCUUCGAUGAGCUGUCUCUGGCGUAACAGCAACAGCCGCUG ----------.((.((((.(((((...((((((((.....((.....)).....)))))))).((((((((((......)))))))))))))))((......))....)))).)) ( -31.90) >consensus A_UA___CUUACAUUGGCGCAGUGCCUUUUGAAACUUUUCGUAUUCCACAUAAUGUUUAAGACGCAGCUCGUCCUCUUCGAUGAGCUGUCUCUGGCGCAACAGCAACAGCCGCUG ................((((.(((.....((((....)))).....)))..............((((((((((......)))))))))).....))))..((((.......)))) (-21.87 = -21.35 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:26 2006