Locus 8145

Sequence ID 3L_DroMel_CAF1
Location 21,478,017 – 21,478,116
Length 99
Max. P 0.890487
window13306

overview

Window 6

Location 21,478,017 – 21,478,116
Length 99
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 96.02
Mean single sequence MFE -24.50
Consensus MFE -23.56
Energy contribution -23.62
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.96
SVM decision value 0.96
SVM RNA-class probability 0.890487
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21478017 99 - 23771897
---UUUCCAGCUAUUAGCACAAACGUUCCAGCUAAUGCAGCUUACUAUUCUGCGGCUGCCGCACAGCUUCCAACUAAUUUGGCAGCCCCAGCAGCUCCGUCC
---......((.((((((............))))))))((((.......(((.((((((((...((.......))....)))))))).))).))))...... ( -24.60)
>DroSec_CAF1 15067 102 - 1
GUUUUUCCAGCUAUUAGCACAAACGUUCCAGCUAAUGCAGCUUACUAUUCUGCGGCUGCCGCACAGCUUCCAACCAAUUUGGCAGCUCCAGCAGCUCCGUCC
.........((.((((((............)))))))).((..........))((((((.(...((((.((((.....)))).)))).).))))))...... ( -24.60)
>DroSim_CAF1 14355 99 - 1
---UUUCCAGCUAUUAGCACAAACGUUCCAGCUAAUGCAGCUUACUAUUCUGCGGCUGCCGCACAGCUUCCAACCAAUUUGGCAGCUCCAGCAGCUCCGUCC
---......((.((((((............)))))))).((..........))((((((.(...((((.((((.....)))).)))).).))))))...... ( -24.60)
>DroYak_CAF1 23631 99 - 1
---UUUUCAGCUAUUAGCACAAACGUUCCAGCUAAUGCAGCUUACUAUUCUUCGGCUGCCGCACAGCUUCCAACCAAUUUGGCGGCUCCAGCAGCUCCGUCC
---.....((((((((((............))))))((((((...........)))))).((..((((.((((.....)))).))))...))))))...... ( -24.20)
>consensus
___UUUCCAGCUAUUAGCACAAACGUUCCAGCUAAUGCAGCUUACUAUUCUGCGGCUGCCGCACAGCUUCCAACCAAUUUGGCAGCUCCAGCAGCUCCGUCC
........((((((((((............))))))((((((...........)))))).((..((((.((((.....)))).))))...))))))...... (-23.56 = -23.62 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:25 2006