| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,474,097 – 21,474,211 |
| Length | 114 |
| Max. P | 0.705215 |
| Location | 21,474,097 – 21,474,211 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.17 |
| Mean single sequence MFE | -38.68 |
| Consensus MFE | -33.25 |
| Energy contribution | -33.70 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21474097 114 - 23771897 UUGAUCUCAUUGCCCCACUCGCGGGCCAUGAUCAUGAUUUCGUUCAUGCUUAGUUUGGGUCCGAUGAGGGGGUUCAGCUGCGUCAUGUAGCAGCACAGCCAGCUGCAAGGAAA------A ....(((....(((((.((((((((((.(((.(((((......))))).))).....)))))).))))))))).((((((.((..(((....)))..))))))))...)))..------. ( -43.50) >DroSec_CAF1 11034 114 - 1 UUGAUCUCAUUGCCCCACUCGCGGGCCAUGAUCAUGAUUUCGUUCAUGCUUAGUUUGGGUCCAAUCAGGGGGUUCAGCUGCGUCAUGUAGCAGCACAGCCAGCUGCAAGGAAA------A ....(((....(((((......(((((.(((.(((((......))))).))).....)))))......))))).((((((.((..(((....)))..))))))))...)))..------. ( -35.40) >DroSim_CAF1 9545 114 - 1 UUGAUCUCAUUGCCCCACUCACGGGCCAUGAUCAUGAUUUCGUUCAUGCUUAGUUUGGGUCCAAUCAGGGGGUUCAGCUGCGUCAUGUAGCAGCACAGCCAGCUGCAAGGAAA------A ....(((....(((((......(((((.(((.(((((......))))).))).....)))))......))))).((((((.((..(((....)))..))))))))...)))..------. ( -35.40) >DroEre_CAF1 11124 114 - 1 UUGAUCUCAUUACCCCACUCGCGGGCCAUGAUCAUGAUUUCGUUCAUGCUCAGUUUGGGUCCGAUCAGGGGGUUUAGCUGCGUCAUGUAGCAGCACAGCCAGCUGCAAGGAAA------A ...........(((((.((..((((((.(((.(((((......))))).))).....))))))...)))))))...(((((........))))).(((....)))........------. ( -40.30) >DroYak_CAF1 20049 114 - 1 UUGAUCUCAUUACCCCACUCGCGGGCCAUGAUCAUGAUUUCGUUCAUGCUCAGUUUGGGUCCGAUCAGAGGGUUUAGCUGCGUCAUGUAGCAGCACAACCAGCUGCAAGGAAA------A ..............((.(((.((((((.(((.(((((......))))).))).....))))))....)))((((..(((((........)))))..))))........))...------. ( -37.60) >DroAna_CAF1 9822 120 - 1 UUAAUGGGGUUGCCCCACUCCCUGGCCAUAAUCAUGAUUUCGUUCAUAGAUAGUUUGGGGCCGAUCAGGGGGUUCAGCUGGGUCAUGUAACAGCAGAGCCAGCUACAAUGAUAAAACAAA .....((((...))))(((((((((((...(((((((......)))).))).......))))....)))))))..((((((.((.(((....))))).))))))................ ( -39.90) >consensus UUGAUCUCAUUGCCCCACUCGCGGGCCAUGAUCAUGAUUUCGUUCAUGCUUAGUUUGGGUCCGAUCAGGGGGUUCAGCUGCGUCAUGUAGCAGCACAGCCAGCUGCAAGGAAA______A ...........(((((.....((((((.(((.(((((......))))).))).....)))))).....))))).((((((.((..(((....)))..))))))))............... (-33.25 = -33.70 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:24 2006