Locus 8141

Sequence ID	3L_DroMel_CAF1
Location	21,466,463 – 21,466,556
Length	93
Max. P	0.839725

overview

Window 9

Location	21,466,463 – 21,466,556
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	88.49
Mean single sequence MFE	-33.44
Consensus MFE	-26.72
Energy contribution	-28.68
Covariance contribution	1.96
Combinations/Pair	1.11
Mean z-score	-1.78
Structure conservation index	0.80
SVM decision value	0.75
SVM RNA-class probability	0.839725
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21466463 93 - 23771897
GUGGGCGGACCUUCGUCUCUGAACAAAGAGGACUAUGGCGAGGAGAACAGUUCCUGCGCCUGGGGCGAAUUCUCCGCUUACCCCAUUCACAUG
(((((((((..(((((((((......))))..(((.(((((((((.....))))).))))))).)))))...)))))))))............ ( -36.00)
>DroSec_CAF1 3101 93 - 1
GUGGGCGGACCAUCGUCUCUGAACAAAGAUGACUAUGGCGAGGAAAACAGUUCCUGCGCCUGGGGCGAAUUCUCCGCCUACCCCAUUCACAUG
(((((((((...((((((((......)))...(((.(((((((((.....))))).))))))))))))....)))))))))............ ( -37.20)
>DroSim_CAF1 1048 93 - 1
GUGGGCGGACCAUCGUCUCUGAACAAAGAUGACUAUGGCGAGGAGAACAGUUCCUGCGCCUGGGGCGAAUUCUCCGCCUACCCCAUUCACAUG
(((((((((...((((((((......)))...(((.(((((((((.....))))).))))))))))))....)))))))))............ ( -36.90)
>DroEre_CAF1 3620 84 - 1
GUGGGCGGACCUUCAUCUCUGAACAAAGCGCACUAUGCCGAGGAGA---------GCGCCUGGGGCGAAUUCUCUGCCUACCCCAUUCACAUG
(((((((((......(((((...((.((....)).))....)))))---------.((((...)))).....)))))))))............ ( -24.20)
>DroYak_CAF1 1106 93 - 1
GUGGGCGGACCUUCAUCUCUAAACAAAGGGCACUACGCCGAGGAGAACGGUCCCUGCGCCUGGGGAGAAUUCUCCGCCUACCCAAUUCACAUG
((((((((((((((..(((.........(((.....))))))..))).)))))..........((((....))))))))))............ ( -32.90)
>consensus
GUGGGCGGACCUUCGUCUCUGAACAAAGAGGACUAUGGCGAGGAGAACAGUUCCUGCGCCUGGGGCGAAUUCUCCGCCUACCCCAUUCACAUG
(((((((((..((((((((.......((....))..(((((((((.....))))).)))).))))))))...)))))))))............ (-26.72 = -28.68 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:18 2006