| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,464,978 – 21,465,098 |
| Length | 120 |
| Max. P | 0.506187 |
| Location | 21,464,978 – 21,465,098 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.43 |
| Mean single sequence MFE | -16.70 |
| Consensus MFE | -16.13 |
| Energy contribution | -15.80 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.97 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21464978 120 - 23771897 AUUUACAGCAACUUUCCGUACUUGUAUUGAAUUAAAUUACAUUUAAUACCUUUAAAAUGUGGUUUUACCAAAACCAGAAGGAACCUUGAUAUAUCAUUAAAUUUCAAUACACAACUUUAA ......................(((((((((((((((...))))))).(((((......((((((.....)))))))))))......................))))))))......... ( -16.60) >DroSim_CAF1 6405 118 - 1 AUUUACAGCAACUUUCCGUACUUGUAUUGAAUUA-AUUACAUUUAAUACCUUUAACAAGUGGUUUUACCAAGACCAGAAGGAACAUUGAUAUAUCAUUAAAUUUCAAUACACAACUUU-A ......................((((((((((((-((.....(((((.(((((......((((((.....)))))))))))...)))))......)))))..))))))))).......-. ( -17.10) >DroYak_CAF1 6285 119 - 1 AUUUACAGCAACUUUCCGUACUUGUAUUGAAUUAAAUUACAUUUAAUACCUUUAACAAGUGGUUUAACCUAAACCUGAAGGAACAUUGAUAUAUCAUUAAAUUUCAAUACACAAUUUU-A ......................(((((((((((((((...))))))).((((((......((((((...))))))))))))......................)))))))).......-. ( -16.40) >consensus AUUUACAGCAACUUUCCGUACUUGUAUUGAAUUAAAUUACAUUUAAUACCUUUAACAAGUGGUUUUACCAAAACCAGAAGGAACAUUGAUAUAUCAUUAAAUUUCAAUACACAACUUU_A ......................(((((((((.................(((((......(((((((...))))))))))))....(((((.....)))))..)))))))))......... (-16.13 = -15.80 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:17 2006