Locus 814

Sequence ID 3L_DroMel_CAF1
Location 2,479,436 – 2,479,532
Length 96
Max. P 0.582751
window1252

overview

Window 2

Location 2,479,436 – 2,479,532
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.14
Mean single sequence MFE -26.64
Consensus MFE -17.58
Energy contribution -18.80
Covariance contribution 1.22
Combinations/Pair 1.23
Mean z-score -1.50
Structure conservation index 0.66
SVM decision value 0.10
SVM RNA-class probability 0.582751
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2479436 96 - 23771897
UUAGUUGGGCUUUUAUUUUGAC-ACGAUGUUGGCUUCACUUACAUGACUCCAACUUUAGGCGCCGUAAUUCUCGCUCGGCUAUGCCCGACCUCAUUU
...(((((((............-.....(((((..(((......)))..))))).......((((...........))))...)))))))....... ( -25.30)
>DroSec_CAF1 102700 92 - 1
UUAGUUGGGCUUCUAAUUUGGC-----UGUUGGCUUCACUUACAUGACUCCAGCUUAAGGCGCCGUAGUUCUCGCUCGGCUAUGCCCGACCUCAUUU
...(((((((..........((-----((((((..(((......)))..)))))....)))((((.(((....)))))))...)))))))....... ( -30.00)
>DroSim_CAF1 97558 92 - 1
UUAGUUGGGCUUUUAAUUUGGC-----UGUUGGCUUCACUUACAUGACUCCAGCUUAAGGCGCCGUAGUUCUCGCUCAGCUAUGCCCGACCUCAUUU
...(((((((.........(((-----...(((..(((......)))..)))((.....)))))((((((.......)))))))))))))....... ( -25.40)
>DroEre_CAF1 102436 95 - 1
UUAGUUGGGCAU-UCAAUUGAC-CGCGUGUCGGCUUCACUUACAUGACUCCAGCUUGAGGCGUCGUAGUUCCCGCUCGGCUAUGCCCGACCUCAUUU
...(((((((((-......(.(-((.(((..((((........(((((.((.......)).)))))))))..))).)))).)))))))))....... ( -29.10)
>DroYak_CAF1 100938 96 - 1
UUAGUUGGCUAUUUCAUUUCAU-AUCGUGUUGGCUACACUUACAUGACUCCAGCUUGAGGCGUCGCAGUUCCCGCUCGGCUAUGCCCGACCUCAUUU
..((((((.(((........))-)((((((.((.....)).))))))..))))))(((((((..(((....((....))...))).)).)))))... ( -22.30)
>DroAna_CAF1 83283 95 - 1
UGAGUUUGGCUUUCGCGUCGGAGAU--CGCAGACCCGACUUACAUGACUCCAGCUUGAGGCGUCUGAGCUCCCGCUCGGCUAUUCCCGACCUCACCU
((((....((....))(((((..((--.((((((((........((....))......)).))))((((....)))).)).))..)))))))))... ( -27.74)
>consensus
UUAGUUGGGCUUUUAAUUUGAC_A___UGUUGGCUUCACUUACAUGACUCCAGCUUGAGGCGCCGUAGUUCCCGCUCGGCUAUGCCCGACCUCAUUU
...(((((((..................(((((..(((......)))..))))).......((((.(((....)))))))...)))))))....... (-17.58 = -18.80 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:50 2006