Locus 8133

Sequence ID 3L_DroMel_CAF1
Location 21,442,864 – 21,442,956
Length 92
Max. P 0.758934
window13288

overview

Window 8

Location 21,442,864 – 21,442,956
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 89.13
Mean single sequence MFE -26.07
Consensus MFE -22.44
Energy contribution -20.90
Covariance contribution -1.54
Combinations/Pair 1.29
Mean z-score -2.04
Structure conservation index 0.86
SVM decision value 0.50
SVM RNA-class probability 0.758934
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21442864 92 - 23771897
CCGUUUCUUUUGAUUGUAACUAAGCUAAUUAUGUGCUUAGUGGCAACUUAAUGUCGGACUAAGACAGGCGGGACAACGACCUCAAAAGAAGC
..(((((((((((((((.(((((((.........))))))).)))).....((((.......))))((((......)).))))))))))))) ( -30.20)
>DroSim_CAF1 16265 92 - 1
GCGUUUCUUUGGAAUGUAACUAAGCUAAUUAUGUGCUUAGUGGCAACUUAAAGUCGGACUAAGACAGGCGGGACAACGACCCCAGAAGAAGC
..((((((((((..(((.(((((((.........))))))).))).......(((.......))).((((......)).)))))).)))))) ( -25.90)
>DroYak_CAF1 23496 92 - 1
GCGUUUCUUUGGAAUGUAAUUAAGCUAAUUAUGUGCUUAGUGGCAACUUAAAGCCCAACCAAGACAGGCGGGACAACGAACCUAGAAGAGAC
..((((((((((..(((.(((((((.........))))))).))).......((((..((......)).))).)......))..)))))))) ( -22.10)
>consensus
GCGUUUCUUUGGAAUGUAACUAAGCUAAUUAUGUGCUUAGUGGCAACUUAAAGUCGGACUAAGACAGGCGGGACAACGACCCCAGAAGAAGC
..((((((((....(((.(((((((.........))))))).))).......(((...........)))(((........))).)))))))) (-22.44 = -20.90 +  -1.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:05 2006