Locus 8132

Sequence ID 3L_DroMel_CAF1
Location 21,442,021 – 21,442,118
Length 97
Max. P 0.631274
window13287

overview

Window 7

Location 21,442,021 – 21,442,118
Length 97
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.27
Mean single sequence MFE -28.43
Consensus MFE -12.25
Energy contribution -13.00
Covariance contribution 0.75
Combinations/Pair 1.24
Mean z-score -2.43
Structure conservation index 0.43
SVM decision value 0.20
SVM RNA-class probability 0.631274
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21442021 97 + 23771897
AUUGCAGUGCAGAGCCACUUGCAUUGCCAGUUGGAAACACUUAAAUGAUAUAACUUCAUUUCGGAGACUGGUAAC---------CAUUCACA---------AUGGGUAAGUU-----GGC
.((((...)))).(((((((((.((((((((((....).((.((((((.......)))))).)).)))))))))(---------(((.....---------))))))))).)-----))) ( -32.70)
>DroSim_CAF1 15263 97 + 1
AUUGCAGUGCACAGCCACUUGCAUAGCCAGUUGGAGACACUUAAAUGAUAUAACUUCAUUUCGGAGACUGGUAAC---------CAUUCACA---------AUGGGUAAGUU-----GGC
.............(((((((((...((((((((....).((.((((((.......)))))).)).)))))))..(---------(((.....---------))))))))).)-----))) ( -30.00)
>DroYak_CAF1 22490 106 + 1
AUUGCAGUCCAGAGCGACUUGCAUUCCCAAUUGGAAACAAUUAAAUGAUAUAACUUCAUUCCGGAGUCUGGUAAC---------AAUUCACAGCCAUUCAAAUGGGUAAGUU-----GGC
..............(((((((((((((.(((((....))))).(((((.......)))))..)))))(((.....---------......)))((((....)))))))))))-----).. ( -23.80)
>DroAna_CAF1 42436 103 + 1
AUUGCGCUGCAUAGC-ACUUGCAUUGCCAGGUGAAGUUAUUUAAAUGAUCUAAUU-------GGAACCUGGUAACAAAUAAAGCCAUUCAAA---------AUGGGUAAGUUAUGAAGGC
...((.((.((((..-((((((.(((((((((..(((((...........)))))-------...))))))))).........((((.....---------)))))))))))))).)))) ( -27.20)
>consensus
AUUGCAGUGCAGAGCCACUUGCAUUGCCAGUUGGAAACACUUAAAUGAUAUAACUUCAUUUCGGAGACUGGUAAC_________CAUUCACA_________AUGGGUAAGUU_____GGC
..(((((((......))).))))((((((((((....))..............((((.....)))))))))))).............................................. (-12.25 = -13.00 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:04 2006