| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,431,581 – 21,431,677 |
| Length | 96 |
| Max. P | 0.699696 |
| Location | 21,431,581 – 21,431,677 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.42 |
| Mean single sequence MFE | -20.94 |
| Consensus MFE | -12.71 |
| Energy contribution | -13.93 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21431581 96 - 23771897 CGGCAGAGCGCCUAGUUUUGAGUACAAAAGUUAAGUAAAAAC-----------------UUGGGAUAGGCUUAUCAAUUUAAUCAAAUAGCCAAGGUAACUCAAAGUAUAAAA .(((.....)))...((((((((((.....((((((....))-----------------))))....((((.................))))...)).))))))))....... ( -18.93) >DroSec_CAF1 2132 111 - 1 CGGCAGAGUGCCUUGUUUUCAGAACGAAAGUUAAGUAAAAACCAAAGAAAGGAAAAAAAUUGAGAUAGGUUUAUCCAUU-AAUCAAAUA-CCAAGGUAACUCAAAGUAAUUCA .....((((((((((.(((((((((....))).........((.......)).......))))))..((.....))...-.........-.)))))).))))........... ( -21.20) >DroSim_CAF1 6319 111 - 1 CGGCAGAGUGCCUUGUUUUAAGAACGAAAGUUAAGUAAAAACCAAAGAAAGGAAAACAAUUGAGAUAGGUUUAUCCAUU-UAUCAAAUA-CCAAGGUAACUCAAAGUAAUUCA .....(((((((((((((((..(((....)))...))))).((.......))...........(((((((......)))-)))).....-.)))))).))))........... ( -22.70) >consensus CGGCAGAGUGCCUUGUUUUAAGAACGAAAGUUAAGUAAAAACCAAAGAAAGGAAAA_AAUUGAGAUAGGUUUAUCCAUU_AAUCAAAUA_CCAAGGUAACUCAAAGUAAUUCA .....(((((((((((((((..(((....)))...))))).......................((((....))))................)))))).))))........... (-12.71 = -13.93 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:03 2006