Locus 813

Sequence ID 3L_DroMel_CAF1
Location 2,476,384 – 2,476,474
Length 90
Max. P 0.829267
window1251

overview

Window 1

Location 2,476,384 – 2,476,474
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 72.61
Mean single sequence MFE -25.95
Consensus MFE -5.68
Energy contribution -5.15
Covariance contribution -0.53
Combinations/Pair 1.25
Mean z-score -2.65
Structure conservation index 0.22
SVM decision value 0.71
SVM RNA-class probability 0.829267
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2476384 90 + 23771897
AGGUAAUUUCGUUGCUGUGGCUU--UUGAUUGAUUCGAUGGGGAGC-GAAGGCUCUGAAGCG--GAUUUAUAAUGUCGACGAGCUACAGCAGAAG
...........((((((((((((--(((((.((((((....(((((-....)))))....))--))))......))))).))))))))))))... ( -35.70)
>DroSec_CAF1 99631 71 + 1
AGGUAAUUUCGUUGCUGUGGCUU--UUGAUUGAUUCGAUGGG----------------------GAUUUAUAAUGUCGACGAGCUACAGCAGAAG
...........((((((((((((--(((((.(((((.....)----------------------))))......))))).))))))))))))... ( -22.70)
>DroSim_CAF1 94078 71 + 1
AGGUAAUUUCGUUGCUGUGGCUU--UUGAUUGAUUCGAUGGG----------------------GAUUUAUAAUGUCGACGAGCAACAGCAGAAG
...........(((((((.((((--(((((.(((((.....)----------------------))))......))))).)))).)))))))... ( -18.50)
>DroEre_CAF1 99345 85 + 1
AGGUAAUUUCGUUGCUGUGGCUU--UUGAUUGAUUCGAUGGGGAGC-GAAGGCUCUCGAGCG--GAUUUGUAAUGUCGACGAGC-----CGAAAG
.((((((...)))))).((((((--(((((.((((((.(.((((((-....)))))).).))--))))......))))).))))-----)).... ( -30.30)
>DroYak_CAF1 97816 85 + 1
AGGUAAUUUCGUUGCUGUGGCUU--UUGAUUGAUUCGAUGGCGAGC-GAAGGCUCUCAAGCG--GAUUUACAAAGUCGACGAGC-----CUGAAG
.((((((...))))))..(((((--((((((((((((...(.((((-....)))).)...))--)))).....)))))).))))-----)..... ( -26.60)
>DroPer_CAF1 113099 89 + 1
AGGUAAUUCCUUUGCUGUGGCUUUUUUGAUUGAUUUGAUGGCAAACCAAAGGCAGCGGAGCGCAGAUAAAUAAUAAAGAGAGGCAGA------GG
........((((((((....((((((..(((.(((((.(((....)))...((......)).))))).)))...)))))).))))))------)) ( -21.90)
>consensus
AGGUAAUUUCGUUGCUGUGGCUU__UUGAUUGAUUCGAUGGGGAGC_GAAGGCUCU__AGCG__GAUUUAUAAUGUCGACGAGC_AC__CAGAAG
.......((((((((....))....((((.....)))).......................................))))))............ ( -5.68 =  -5.15 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:49 2006