Locus 8128

Sequence ID 3L_DroMel_CAF1
Location 21,412,443 – 21,412,553
Length 110
Max. P 0.717091
window13281

overview

Window 1

Location 21,412,443 – 21,412,553
Length 110
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 87.34
Mean single sequence MFE -22.05
Consensus MFE -13.82
Energy contribution -14.33
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.62
Structure conservation index 0.63
SVM decision value 0.39
SVM RNA-class probability 0.717091
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21412443 110 - 23771897
GGCAACUACGUAAGAAUAACAUGAACUGCGCUA-AAUGCACAGACG------UAGCCAGUAGACAGUUACUCACAAAAAACUGCUCACACCCACAGCG--AAACCCAUACAAUCGCAAU
(((.((..(....)...........(((.((..-...)).)))..)------).))).((((.(((((..........))))))).)).......(((--(...........))))... ( -21.00)
>DroSec_CAF1 3854 110 - 1
GGCAACUACGUAAGAAUAACAUGAACUGUGCAA-AAUGCACAGACG------UAGCCAGUAGACAGUUACUCACAAAAAACUGCUCACACCCACAGCG--AAACCCAUACAAACGCAAU
(((.((..(....)...........((((((..-...))))))..)------).))).((((.(((((..........))))))).)).......(((--.............)))... ( -22.92)
>DroSim_CAF1 4026 110 - 1
GGCAACUACGUAAGAAUAACAUGAACUGUGCAA-AAUGCACAGACG------UAGCCAGUAGACAGUUACUCACAAAAAACUGCUCACACCCACAGCG--AAACCCAUACAAUCGCAAU
(((.((..(....)...........((((((..-...))))))..)------).))).((((.(((((..........))))))).)).......(((--(...........))))... ( -24.70)
>DroAna_CAF1 3822 116 - 1
GGCAACUCCGUAAAAAUAACAUGAACUGUGCAAAAAUGCACAGAGAUCUGUAUAUCC---AGACAGUUACUCACAAAAAACCGUUCACACCCACACUCACACACUCGAACAAUCGCAAU
.((..................(((((((((((....))))))(((..((((......---..))))...)))..........)))))...................((....))))... ( -19.60)
>consensus
GGCAACUACGUAAGAAUAACAUGAACUGUGCAA_AAUGCACAGACG______UAGCCAGUAGACAGUUACUCACAAAAAACUGCUCACACCCACAGCG__AAACCCAUACAAUCGCAAU
.((......................((((((......))))))..................(((((((..........))))).))............................))... (-13.82 = -14.33 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:59 2006