Locus 8127

Sequence ID 3L_DroMel_CAF1
Location 21,402,050 – 21,402,150
Length 100
Max. P 0.625789
window13280

overview

Window 0

Location 21,402,050 – 21,402,150
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 85.41
Mean single sequence MFE -24.31
Consensus MFE -18.44
Energy contribution -18.84
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.76
SVM decision value 0.19
SVM RNA-class probability 0.625789
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21402050 100 + 23771897
CCUUUUGACAAUAGUCCGGGUCCACUUGAGAUCGGCUCAUUAAGCCUUUCAGCUGGUCAAGUGGUCCGCCUCCUUCUCGCUUCUUCCUCCUUCAUUAGAU
......(((....)))((((.((((((((..((((((.............))))))))))))))))))................................ ( -23.02)
>DroSec_CAF1 34767 100 + 1
CCUUUUGACAAUAGUCCGGGUCCACUUGAGAUCGGCUCAUUAAUCCUUUCAGCUGGUCAAGUGGUCCGCCUCCUGCUCGCAACUUCCUCUAUCAUUAGAU
......((((..((..((((.((((((((..((((((.............)))))))))))))))))).))..)).)).........((((....)))). ( -25.02)
>DroSim_CAF1 34967 100 + 1
CCUUUUGACAAUAGUCCGGGUCCACUUGAGAUCGGCUCAUUAAGCCUUUCAGCUGGUCAAGUGGUCCGCCUCCUGCUCGCGACUUCCUCUAUCAUUAGAU
.((..(((....((((((((.((((((((..((((((.............)))))))))))))).))((.....)).)).)))).......)))..)).. ( -28.72)
>DroEre_CAF1 35779 94 + 1
CCUUUUGACAAUAAUCUUGGUCCACUUGAGGGCGGCUCAUUAAGGCUUUCAGCUGGUCAAGUGGCCCUCCUU------UCUCCUUCCUCCUUCAUUAGAU
.((..(((..........((.......((((((.(((......(((.....))).....))).))))))...------...))........)))..)).. ( -22.09)
>DroYak_CAF1 35877 88 + 1
CCUUUUGACAAUAAUCCGGGUCCACUUGAGAUCGGCUCAUUAAGGCUUUCAGCUGGUCAAGUGGAAC------------CUCCUUCCUCCUGCAUUAGAU
.((..((..........((((((((((((..((((((.............)))))))))))))).))------------))...........))..)).. ( -22.72)
>consensus
CCUUUUGACAAUAGUCCGGGUCCACUUGAGAUCGGCUCAUUAAGCCUUUCAGCUGGUCAAGUGGUCCGCCUCCU_CUCGCUACUUCCUCCUUCAUUAGAU
..................((.((((((((..((((((.............)))))))))))))).))................................. (-18.44 = -18.84 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:56 2006