Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,401,653 – 21,401,760 |
Length | 107 |
Max. P | 0.818233 |
Location | 21,401,653 – 21,401,760 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.22 |
Mean single sequence MFE | -39.60 |
Consensus MFE | -27.36 |
Energy contribution | -27.17 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.24 |
Mean z-score | -1.49 |
Structure conservation index | 0.69 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21401653 107 + 23771897 GUGGAUCGGUAGCCUCAACCGCAUCCACACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU ((((((((((.......)))).))))))....(((...(((((((((((.((((((((.((((((....))).)))))..)))))).))))))))))).)))..... ( -47.90) >DroSec_CAF1 34401 95 + 1 GUGCAUCGGUAGCCUC------------ACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU (((....(((......------------))))))((..(((((((((((.((((((((.((((((....))).)))))..)))))).)))))))))))..))..... ( -36.70) >DroSim_CAF1 34600 95 + 1 GUGGAUCGGUAGCCUC------------ACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU ((((...((...))..------------..))))((..(((((((((((.((((((((.((((((....))).)))))..)))))).)))))))))))..))..... ( -38.10) >DroEre_CAF1 35435 101 + 1 CUGGAUCGGUACCCUUGCCCGCACCCG------CACCCGCAACCGAACAUGGCUGCAGGCCCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU .......((((....)))).(((((((------(....))....((((.(((((((.((((((((....))))).)))..)))).)))))))))))))......... ( -38.40) >DroYak_CAF1 35510 107 + 1 GUGGAUCGGUAACCUCACCCGCACCCGCACCCGCACCCGCACCCGGACAUGGCUGCAGCCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU ((((...(((......))).((....))..))))((..((((((((((.(((((((((((.((((....))))).)))..)))).)))))))))))))..))..... ( -41.00) >DroAna_CAF1 23662 83 + 1 ------------------------CUGGACCCGGACCCGGACCGGGACCAGGUUGUGGUCGCAGCAUGAGCUGGCGCUAGGUAGCCCAGUUCGGGUGUCUGUUUUAU ------------------------((((.(((((.......))))).))))...(..(.(((....((((((((.(((....))))))))))).))).)..)..... ( -35.50) >consensus GUGGAUCGGUAGCCUC________CCG_ACCCACACCCGCACCCGAACUCGGCUGCAGUCGCAGUAGGAGCUGGCGCUAGGUAGUCCAGUUCGGGUGUCUGUUUUAU ................................((((((.............(((((....)))))..(((((((.(((....))))))))))))))))......... (-27.36 = -27.17 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:55 2006