Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,474,283 – 2,474,375 |
Length | 92 |
Max. P | 0.699601 |
Location | 2,474,283 – 2,474,375 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.02 |
Mean single sequence MFE | -16.46 |
Consensus MFE | -7.16 |
Energy contribution | -6.76 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.20 |
Mean z-score | -2.31 |
Structure conservation index | 0.43 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2474283 92 + 23771897 AACACUUUAGAAACUGAACGUCCAAUGAGAUCUGGAUAAUUUUCAG---------------------AACAUACAC----ACAUAUAUUUUUGUGGACACAA---AAAGAAAAACGCGAA ....((((.....(((((.(((((........)))))....)))))---------------------........(----(((........)))).......---))))........... ( -13.60) >DroSec_CAF1 97518 113 + 1 AACACUUUAAAAACUGAACGUCCAACAAAAUCUGAAUAAUUUCUAGAACUCUUUCACAAAUAAAGAGAACAUACAU----GCAUAUAUUUGUGUGGACACAA---AAAGAAAAACGCGAA ...................((((((((((.((((((....))).))).((((((.......)))))).........----.......))))).)))))....---............... ( -17.50) >DroSim_CAF1 91984 111 + 1 AACACUUUAAAAACUGAACGUCCAACAAAAUCUGAAUAAUUUCCAGAACUC--UCACCAAUAAAGAGAACAUACAU----GCAUAUAUUUGUGUGGACACAA---AAAGAAAAACGCGAA ...................((((((((((.((((.........))))..((--((.........))))........----.......))))).)))))....---............... ( -15.90) >DroEre_CAF1 97214 114 + 1 AACACGUUAAAAACUAA-AGUCCAACAAAAUCUGGAUAAUUUCCAGCACCCUUUCACAAAUAA--AGAACAUACAUAUGUACAUAUAUUUUUGUGGACACAA---AAAGAAAAACGCGAA ..(.((((.........-.(((((.(((((.(((((.....))))).................--.(.((((....)))).)......))))))))))....---.......)))).).. ( -18.90) >DroYak_CAF1 95709 116 + 1 AACACGUCAAAAACUAAAAGUCCAACAAAAUCUGAAUAAUUUCCAGUACUCUUUUACAUAUAAAAAGAGCAUACAU----ACAUAUAUUUUUGUGGACAAAAAAAAAAGAAAAACGCGAA ...................(((((.(((((...(((....)))..((((((((((.......)))))))..)))..----........))))))))))...................... ( -16.40) >consensus AACACUUUAAAAACUGAACGUCCAACAAAAUCUGAAUAAUUUCCAGAACUCUUUCACAAAUAAA_AGAACAUACAU____ACAUAUAUUUUUGUGGACACAA___AAAGAAAAACGCGAA ...................((((........(((.........)))..................................(((........)))))))...................... ( -7.16 = -6.76 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:48 2006