Locus 812

Sequence ID 3L_DroMel_CAF1
Location 2,474,283 – 2,474,375
Length 92
Max. P 0.699601
window1250

overview

Window 0

Location 2,474,283 – 2,474,375
Length 92
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.02
Mean single sequence MFE -16.46
Consensus MFE -7.16
Energy contribution -6.76
Covariance contribution -0.40
Combinations/Pair 1.20
Mean z-score -2.31
Structure conservation index 0.43
SVM decision value 0.35
SVM RNA-class probability 0.699601
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2474283 92 + 23771897
AACACUUUAGAAACUGAACGUCCAAUGAGAUCUGGAUAAUUUUCAG---------------------AACAUACAC----ACAUAUAUUUUUGUGGACACAA---AAAGAAAAACGCGAA
....((((.....(((((.(((((........)))))....)))))---------------------........(----(((........)))).......---))))........... ( -13.60)
>DroSec_CAF1 97518 113 + 1
AACACUUUAAAAACUGAACGUCCAACAAAAUCUGAAUAAUUUCUAGAACUCUUUCACAAAUAAAGAGAACAUACAU----GCAUAUAUUUGUGUGGACACAA---AAAGAAAAACGCGAA
...................((((((((((.((((((....))).))).((((((.......)))))).........----.......))))).)))))....---............... ( -17.50)
>DroSim_CAF1 91984 111 + 1
AACACUUUAAAAACUGAACGUCCAACAAAAUCUGAAUAAUUUCCAGAACUC--UCACCAAUAAAGAGAACAUACAU----GCAUAUAUUUGUGUGGACACAA---AAAGAAAAACGCGAA
...................((((((((((.((((.........))))..((--((.........))))........----.......))))).)))))....---............... ( -15.90)
>DroEre_CAF1 97214 114 + 1
AACACGUUAAAAACUAA-AGUCCAACAAAAUCUGGAUAAUUUCCAGCACCCUUUCACAAAUAA--AGAACAUACAUAUGUACAUAUAUUUUUGUGGACACAA---AAAGAAAAACGCGAA
..(.((((.........-.(((((.(((((.(((((.....))))).................--.(.((((....)))).)......))))))))))....---.......)))).).. ( -18.90)
>DroYak_CAF1 95709 116 + 1
AACACGUCAAAAACUAAAAGUCCAACAAAAUCUGAAUAAUUUCCAGUACUCUUUUACAUAUAAAAAGAGCAUACAU----ACAUAUAUUUUUGUGGACAAAAAAAAAAGAAAAACGCGAA
...................(((((.(((((...(((....)))..((((((((((.......)))))))..)))..----........))))))))))...................... ( -16.40)
>consensus
AACACUUUAAAAACUGAACGUCCAACAAAAUCUGAAUAAUUUCCAGAACUCUUUCACAAAUAAA_AGAACAUACAU____ACAUAUAUUUUUGUGGACACAA___AAAGAAAAACGCGAA
...................((((........(((.........)))..................................(((........)))))))...................... ( -7.16 =  -6.76 +  -0.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:48 2006