Locus 8119

Sequence ID 3L_DroMel_CAF1
Location 21,378,743 – 21,378,846
Length 103
Max. P 0.973087
window13268

overview

Window 8

Location 21,378,743 – 21,378,846
Length 103
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 74.84
Mean single sequence MFE -23.63
Consensus MFE -13.52
Energy contribution -12.87
Covariance contribution -0.66
Combinations/Pair 1.23
Mean z-score -2.30
Structure conservation index 0.57
SVM decision value 1.70
SVM RNA-class probability 0.973087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21378743 103 - 23771897
UAAUUUGAAUAAGGGCAUAAAUGCCUUU----CUUUCAUCCCGAAAUUCCGGUUGGUAGGUGUAUUUAGAAGCUUUAUAAUACAGGGACGGGUUUUAAUUUAUUGUC
.....((((.(((((((....)))))))----..)))).((((...((((.((..(((((.((........)))))))...)).))))))))............... ( -21.50)
>DroPse_CAF1 4730 104 - 1
---AUUAAAUAAGGGCAUUAAUGCUGAUAACAUUUAAAUACCAAAUUCCUGGGUGAUAAGCUCAUUUAGAAUGUAUUUAAUGCAAAGCCAUGCUUUUAUUUAUUAUC
---..(((((((((((((....(((.....((((.((((((...((((.(((((((.....)))))))))))))))))))))...))).)))))))))))))..... ( -24.70)
>DroPer_CAF1 4792 104 - 1
---AUUAAAUAAGGGCAUUAAUGCUGAUAACAUUUAAAUACCAAAUUCCUGGGUGAUAAGCUCAUUUAGAAUGUAUUUAAUGCAAAGCCAUGCUUUUAUUUAUUAUC
---..(((((((((((((....(((.....((((.((((((...((((.(((((((.....)))))))))))))))))))))...))).)))))))))))))..... ( -24.70)
>consensus
___AUUAAAUAAGGGCAUUAAUGCUGAUAACAUUUAAAUACCAAAUUCCUGGGUGAUAAGCUCAUUUAGAAUGUAUUUAAUGCAAAGCCAUGCUUUUAUUUAUUAUC
.....(((((((((((((....(((...............(((......))).......((....(((((.....))))).))..))).)))))))))))))..... (-13.52 = -12.87 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:45 2006