Locus 8114

Sequence ID 3L_DroMel_CAF1
Location 21,347,057 – 21,347,169
Length 112
Max. P 0.959406
window13258

overview

Window 8

Location 21,347,057 – 21,347,169
Length 112
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 93.02
Mean single sequence MFE -18.04
Consensus MFE -14.92
Energy contribution -15.32
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.83
SVM decision value 1.50
SVM RNA-class probability 0.959406
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21347057 112 + 23771897
CAUAAACUAACUUUCCAUAAUGCGAUUAGACCCAGCAGCACCAUGCAAGUC---CACCUACCCCAAUCUGCGAGAAAUCGCAAAAUUUCUGCAGCACACGCACAAAAACCAAAAG
....................((((....(((...(((......)))..)))---.............((((.((((((......))))))))))....))))............. ( -18.30)
>DroSec_CAF1 49840 111 + 1
CAUAAACUAACUUUCCAUAAUGCGAUUAGCCCCAGCAACACCAUGCA-GUC---CACCUACCCCAAUCUGCGAGAAAUCGCAAAAUUUCUGCAGCACACGCACAAAAACCAAAAG
....................((((....((....)).......((((-(..---..............(((((....)))))......))))).....))))............. ( -17.65)
>DroSim_CAF1 51073 111 + 1
CAUAAACUAACUUUCCAUAAUGCGAUUAGCCCCAGCAGCACCAUGCA-GUC---CACCUACCCCAAUCUGCGAGAAAUCGCAAAAUUUCUGCAGCACACGCACAAAAACCAAAAG
....................((((....((....)).((....((((-(..---..............(((((....)))))......)))))))...))))............. ( -18.25)
>DroEre_CAF1 51933 115 + 1
CAUAAACUAACAUUCCAUAAUGCGAUUAGCCCCAACAGCACCAUGCAAGUGCCCAACCUACCCCAAUCUGCGAGAAAUCGCAAAAUUUCUGCAGCACACGCACAAAAACCAAAGG
....................((((....((..((...((((.......))))................(((((....))))).......))..))...))))............. ( -17.80)
>DroYak_CAF1 77493 112 + 1
CAUAAACUAAAAUUCCAUAAUGCGAUUAGGCCCAGCAGCAAAAUGCAAGUC---CACCUACCCCAAUCUGCGAGAAAUCUGAAAUUUUCUGCAGCACACGCACAAAAACGAAAAG
....................((((....((.(..(((......)))..).)---)............((((.(((((........)))))))))....))))............. ( -18.20)
>consensus
CAUAAACUAACUUUCCAUAAUGCGAUUAGCCCCAGCAGCACCAUGCAAGUC___CACCUACCCCAAUCUGCGAGAAAUCGCAAAAUUUCUGCAGCACACGCACAAAAACCAAAAG
....................((((..........(((......))).....................((((.((((((......))))))))))....))))............. (-14.92 = -15.32 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:35 2006