Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,346,646 – 21,346,737 |
Length | 91 |
Max. P | 0.524139 |
Location | 21,346,646 – 21,346,737 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 94.46 |
Mean single sequence MFE | -22.74 |
Consensus MFE | -19.02 |
Energy contribution | -18.78 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.30 |
Structure conservation index | 0.84 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21346646 91 + 23771897 -------ACUCUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGAAUAGG -------....(((((....))..........(((((....(((((.((((((((......)))))))).......)))))..)))))..)))..... ( -19.50) >DroSec_CAF1 49417 91 + 1 -------ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGCAGAAUGGAAUGGG -------.....(((.(((..((((......................((((((((......)))))))).......((...))))))..)))..))). ( -21.50) >DroSim_CAF1 50650 91 + 1 -------ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGCAGAAUGGAAUGGG -------.....(((.(((..((((......................((((((((......)))))))).......((...))))))..)))..))). ( -21.50) >DroEre_CAF1 51520 91 + 1 -------ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGGAUGGG -------.((((((((....)).......((.(((((....(((((.((((((((......)))))))).......)))))..))))).)))))))). ( -25.30) >DroYak_CAF1 77086 98 + 1 UCCGCCCACUGUUCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGGAUGGG ....((((......((....)).....((((.(((((....(((((.((((((((......)))))))).......)))))..))))).)))).)))) ( -25.90) >consensus _______ACUGUCCGCCCACGCUGCCACUCAAUCUAUAAAUAUGCCAGACUUUGCAUAGCCGUAAAGUCAACAAAAGGCAUCCGUAGAAUGGAAUGGG ................(((..((((......................((((((((......)))))))).......((...))))))..)))...... (-19.02 = -18.78 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:34 2006