Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,346,066 – 21,346,172 |
Length | 106 |
Max. P | 0.732807 |
Location | 21,346,066 – 21,346,172 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 68.57 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -6.37 |
Energy contribution | -6.87 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -2.25 |
Structure conservation index | 0.24 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21346066 106 + 23771897 AGUGCAAA-AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUUUGUGGCCUUAGAGACACAAUUUACCUAAUGCCACACGAUC (((((...-.((((((.((((((((((........)).)))))...)))..))))))...)))))..((((((.((((.............)))).))))))..... ( -29.22) >DroPse_CAF1 65398 99 + 1 UGAAUAAACACACCAA----UAGGACGGUGCACGUGGCGAAUGCGUAAUAAAUUUCAU-G-CGACAGGAUGGCCUUAACGCAGCCAUUUGCUUAAUGCCC--GGGCA ................----..(..(((.(((...((((((((.((...........(-(-((..(((....)))...))))))))))))))...)))))--)..). ( -25.10) >DroSec_CAF1 48829 106 + 1 AGUGCAAA-AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUCUGUGGCCUUAGAGCCACAAUUUACCUAAUGCCACAAGAUC (((((...-.((((((.((((((((((........)).)))))...)))..))))))...)))))((((((((.((((.............)))).))))).))).. ( -30.02) >DroSim_CAF1 50060 106 + 1 AGUGCAAA-AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUGUGUGGCCUUAGAGCCACAAUUUACCUAAUGCCACACGAUC .((((...-.((((((.((((((((((........)).)))))...)))..))))))...))))(((((((((.((((.............)))).))))))))).. ( -33.82) >DroEre_CAF1 50955 85 + 1 AGUACAAA-AUGAAAAAGUUU---------------------ACGUAAUAAUUUCCAAUGGCAUUUUUGUGGCCUUACAGCCACAAUUUACCUAAUGCCACCCGAGC ........-............---------------------..........(((...(((((((.(((((((......))))))).......)))))))...))). ( -17.70) >DroPer_CAF1 69305 99 + 1 UGAAUAAACACACCAA----UAGGACGGUGCACGUGGCGAAUGCGUAAUAAAUUUCAU-G-CGACAGGAUGGCCUUAACGCAGCCAUUUGCUUAAUGCCC--GGGCA ................----..(..(((.(((...((((((((.((...........(-(-((..(((....)))...))))))))))))))...)))))--)..). ( -25.10) >consensus AGUACAAA_AUGGAAAAGUUUAUGCCCUCUCACAUGGCGCAUACGUAAUAAUUUCCAAUGGCACUUGUGUGGCCUUAGAGCCACAAUUUACCUAAUGCCACACGAUC ....................................................................(((((.((((.............)))).)))))...... ( -6.37 = -6.87 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:33 2006