| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,344,827 – 21,344,924 |
| Length | 97 |
| Max. P | 0.940012 |
| Location | 21,344,827 – 21,344,924 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 81.96 |
| Mean single sequence MFE | -28.36 |
| Consensus MFE | -16.40 |
| Energy contribution | -19.32 |
| Covariance contribution | 2.92 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21344827 97 + 23771897 UAGUGAAGAGCUUCAGAUCCAGCAUCGUCAGAAUUUUUGGCUAAAACGUAGAAAUUUCGAAGGGGAUUUUGGCUGUGUGCGAAGAAGUUUCUUACAA ..((((..((((((.((..((((...((((((...)))))).........(((((..(....)..))))).))))..).)...))))))..)))).. ( -27.30) >DroSec_CAF1 47626 97 + 1 UUGUGAAGAGCUUCAGCUCCAGCAUCGUCAGAAUUUUUGGCUAAAACGUAGAAAUUUCGAAGGGGAUUUUGGCUGUGUGCGGAGAAGUUUCUUACAA .(((((..((((((.((.(((((...((((((...)))))).........(((((..(....)..))))).)))).).))...))))))..))))). ( -32.10) >DroSim_CAF1 48817 96 + 1 UAGUGAAGAACUUCAGCUCCAGCAUCGUCAGAAUU-UUGGCUAAAACGUAGAAAUUUCGAAGGGGAUUUCGGCUGUGUGCGGAGAAGUUUCUUACAA ..((((..((((((.((.(((((...(((((....-))))).........(((((..(....)..))))).)))).).))...))))))..)))).. ( -33.50) >DroEre_CAF1 49718 84 + 1 UAGCGAAGAGCUU------------CAUCAACAUUUUUGGGUGAAGCGUAGGAAUUUCUGAG-CGAUUUUAUAUGUAUUCGGAGAAGUUUCUUACAA .........((((------------((((..........))))))))(((((((((((((((-((........)))..)))))))...))))))).. ( -22.40) >DroYak_CAF1 75236 96 + 1 UAGUGAAGAGCUUCAGCUCCAGCAUCAUCAAAAUUUGCGGGUAAA-CCUAGGAAUUUCCAAGGGGAUUUUAUGUGUGUGCGUAGAAGUUUCUUACAA ..((((..((((((.((....(((.(((.(((((((.((((....-))).((.....))..).)))))))))))))..))...))))))..)))).. ( -26.50) >consensus UAGUGAAGAGCUUCAGCUCCAGCAUCGUCAGAAUUUUUGGCUAAAACGUAGAAAUUUCGAAGGGGAUUUUGGCUGUGUGCGGAGAAGUUUCUUACAA ..((((..((((((.((.(((((...(((((.....))))).........((((((((....)))))))).)))).).))...))))))..)))).. (-16.40 = -19.32 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:32 2006