Locus 8110

Sequence ID 3L_DroMel_CAF1
Location 21,342,752 – 21,342,859
Length 107
Max. P 0.994666
window13254

overview

Window 4

Location 21,342,752 – 21,342,859
Length 107
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 75.76
Mean single sequence MFE -38.45
Consensus MFE -24.47
Energy contribution -24.50
Covariance contribution 0.03
Combinations/Pair 1.33
Mean z-score -2.92
Structure conservation index 0.64
SVM decision value 2.50
SVM RNA-class probability 0.994666
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21342752 107 - 23771897
UCAAUGAAAUCCAGACAGUUUCU--CGCCUAGAUGCAUUUGGCCUGCGUGGGCCUAACGGUCCAGCAAAAGUGCAUC-UGCGAU--GAGGAACGAGGCGAUGGAUGAAGGAA
((......(((((..(.((((((--(((.(((((((((((....(((.((((((....))))))))).)))))))))-)).).)--)))))))...)...)))))....)). ( -44.40)
>DroSec_CAF1 45644 106 - 1
UCUAUGAAAUCCAGACAGU-UCU--CGCCAAGAUGCAUUUGGCCUGCGUGGGCCUAACGGUCCAGCAAAAGUGCAUC-UGCGAU--GAGGAACGAGGCGAUGUAUGGAGGAA
.........((((.(((..-..(--((((.((((((((((....(((.((((((....))))))))).)))))))))-).((..--......)).)))))))).)))).... ( -41.70)
>DroSim_CAF1 46821 106 - 1
UCUAUGAAAUCCAGACAGU-UCU--CGCCAAGAUGCAUUUGGCCUGCGUGGGCCUAACGGUCCAGCAAAAGUGCAUC-UGCGAU--GAGGAACGAGGCGAUGGAUGGAGGAA
.........((((..((..-..(--((((.((((((((((....(((.((((((....))))))))).)))))))))-).((..--......)).)))))))..)))).... ( -42.30)
>DroEre_CAF1 47759 85 - 1
UCUAUGAAAUCCCGACAGU--CU--CGCCAAGAUGCAUUUGGCCUGCGUGGGCCUAACGGUCCGGCAAAAAUGCAUC-UGCGCU--GAG--------------------GAA
.........(((...(((.--..--(((..((((((((((....(((.((((((....))))))))).)))))))))-))))))--).)--------------------)). ( -33.20)
>DroYak_CAF1 73224 105 - 1
UCUAUGAAAUCCAGACAGU--CU--CGCCAAGAUGCAUUUGGCCUGCGUGGGGCUAACGGUUCAGCAAAAAUGCAUC-UGCGAU--GAGGAACGAGGCGAUGGAUGGAGGAA
.........((((..((..--.(--((((.((((((((((....(((.((((.(....).))))))).)))))))))-).((..--......)).)))))))..)))).... ( -35.10)
>DroPer_CAF1 65254 91 - 1
ACUCGGAG-------GAGU-UCUAAGGCGAAAAUGCGAUUCGCUGGCGUGGGCUUAACGGUCCAGA--GAUUGCCCCGAGCGACUGGAGUCUCGAGUCG-----------AG
.(((((.(-------(...-(((..((((((.......))))))....((((((....)))))).)--))...)))))))(((((.(.....).)))))-----------.. ( -34.00)
>consensus
UCUAUGAAAUCCAGACAGU_UCU__CGCCAAGAUGCAUUUGGCCUGCGUGGGCCUAACGGUCCAGCAAAAGUGCAUC_UGCGAU__GAGGAACGAGGCGAUGGAUGGAGGAA
.........................(((...(((((((((....(((.((((((....))))))))).)))))))))..))).............................. (-24.47 = -24.50 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:31 2006