Locus 811

Sequence ID 3L_DroMel_CAF1
Location 2,470,104 – 2,470,202
Length 98
Max. P 0.854459
window1249

overview

Window 9

Location 2,470,104 – 2,470,202
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -21.11
Consensus MFE -10.94
Energy contribution -10.46
Covariance contribution -0.48
Combinations/Pair 1.36
Mean z-score -2.13
Structure conservation index 0.52
SVM decision value 0.80
SVM RNA-class probability 0.854459
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2470104 98 - 23771897
AUAAAAGUCUAGCAAUGGGAACCCCCACAAUUAAUUCGCUCAGUGUACUGAGCCACCAUGAAAAUAGGGAACCCAAAACAGUAACAGCUGUAGCAACC
...........((..((((..(((.............((((((....)))))).............)))..))))..(((((....))))).)).... ( -26.17)
>DroSec_CAF1 93308 96 - 1
AUAUAAUUCUCUCACGAGGAA--GACACAAUUCUUCCUCUCAGUGCACUGAGCCACUAUGAAAAUAGGGAACCCAAAACAGUAACAGCUGUAGCAACC
...............((((((--((......))))))))((((....)))).((.((((....))))))........(((((....)))))....... ( -25.40)
>DroSim_CAF1 87773 87 - 1
AUAUUAGCUUCUCACGAGACA--GACACAAUUCUUUCUUUCAGUGCAC--------CAUGA-AAUAGGGAACCCAAAACAGUAACAGCUGUAGCAACC
......(((((((..((((.(--((......))).))))(((......--------..)))-....)))).......(((((....)))))))).... ( -14.50)
>DroEre_CAF1 92934 96 - 1
UUGUAAGUCUCGCAAGAAGAA--GACACAAUUAUUUCUCCCAGUGCACUGAGCCACUAUGAAAAUAGGGAACCCAAAACAGUAACAGCUGUAGCAGCC
.(((...((((....).))).--.)))................(((......((.((((....))))))........(((((....))))).)))... ( -19.20)
>DroYak_CAF1 91365 86 - 1
CUACAAGUCUUGCCAGAGGAA--GACACAGUUCUUUCUCUCAGUGCACUG----------AAAAUAGGGAAUCCAAAACAGUAACAGCUGUAGCAACG
......(..((.((.((((((--((......))))))))((((....)))----------).....)).))..)...(((((....)))))....... ( -20.30)
>consensus
AUAUAAGUCUCGCAAGAGGAA__GACACAAUUCUUUCUCUCAGUGCACUGAGCCACCAUGAAAAUAGGGAACCCAAAACAGUAACAGCUGUAGCAACC
.......((((....))))........................(((....................((....))...(((((....))))).)))... (-10.94 = -10.46 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:47 2006