Locus 8108

Sequence ID 3L_DroMel_CAF1
Location 21,341,062 – 21,341,153
Length 91
Max. P 0.695407
window13251

overview

Window 1

Location 21,341,062 – 21,341,153
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 91.32
Mean single sequence MFE -24.64
Consensus MFE -20.88
Energy contribution -20.56
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -1.37
Structure conservation index 0.85
SVM decision value 0.34
SVM RNA-class probability 0.695407
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21341062 91 - 23771897
UGUUGUUGUUCGGCUUAUGACUGAUUAUAGCUCACGUUUUGGCUAGUCUAUGACGGAGUCUGGAGAAUUUGUCAUCAGACAAACAAUGGCU
.((..(((((.(.((.(((((.((((.((((((.((((.(((.....))).))))))).)))...)))).))))).)).).)))))..)). ( -28.20)
>DroSec_CAF1 43901 90 - 1
-GUUGUUAUUCGGCUUAUGACUGAUUAUGGCUCACGUUAUGGCUAGUCUAUGACGGAGUCUGGAGAAUUUGUCAUCGGACAAACAAUGGCU
-((((((.((((....(((((.((((..(((((.((((((((.....))))))))))))).....)))).)))))))))..)))))).... ( -26.60)
>DroSim_CAF1 45199 90 - 1
-GUUGUUAUUCGGCUUAUGACUGAUUAUGGCUCACGUUUUGGCUAGUCUAUGACGGAGUCUGGAGAAUUUGUCAUCGGACAAACAAUGGCU
-((((((....((((...((((((.......))).)))..)))).((((((((((((.((....)).)))))))).)))).)))))).... ( -23.70)
>DroEre_CAF1 46225 81 - 1
---------UCGGCUUAUGACUGAUUAUGCCUCACGUU-UGGCUAGUCUAUGACGGAGUCUGGAGAAUUUGUCAUCGGACAAACAAUGGCU
---------..((((..((.........(((.......-.)))..((((((((((((.((....)).)))))))).))))...))..)))) ( -21.50)
>DroYak_CAF1 71711 85 - 1
------CGUUCGGCUUAUGACUGAUUAUGCCUCACGUUUUGGCCAGUCUAUGACGGAGUCUGGAGAAUUUGUCAUCGGACAAACAAUGGCU
------.(((.((((...((((((.......))).)))..)))).((((((((((((.((....)).)))))))).)))).)))....... ( -23.20)
>consensus
_GUUGUUAUUCGGCUUAUGACUGAUUAUGGCUCACGUUUUGGCUAGUCUAUGACGGAGUCUGGAGAAUUUGUCAUCGGACAAACAAUGGCU
...........((((...((((((.......))).)))..)))).((((((((((((.((....)).)))))))).))))........... (-20.88 = -20.56 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:28 2006