Locus 8107

Sequence ID 3L_DroMel_CAF1
Location 21,339,468 – 21,339,565
Length 97
Max. P 0.854224
window13250

overview

Window 0

Location 21,339,468 – 21,339,565
Length 97
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 91.68
Mean single sequence MFE -27.42
Consensus MFE -22.69
Energy contribution -22.77
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.62
Structure conservation index 0.83
SVM decision value 0.80
SVM RNA-class probability 0.854224
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21339468 97 + 23771897
GUAACGGCAGUCGAGGGCUGUCGGGAUCAAAGUUGUUAGGACCAUGUGAAAGUGAUGGCUGCG----CAAUGAAAUAAGCUUGGUCAGGCAAAAGCGAUCA
....(((((((.....))))))).((((....(((((..(((((.((.....(.((.((...)----).)).).....)).))))).)))))....)))). ( -28.10)
>DroSec_CAF1 42388 97 + 1
GAAACGGCAGUCGAGGGCUGUCGGGAUCAAAGUUGUUAUGACUAUGUGAAAGUGAUGGCUGCG----UAAUGAAAUAAGCUCGGCCAGGCAAAAGCGAUCA
....(((((((.....))))))).((((..((((.....))))..((.....((.((((((.(----(..........)).))))))..))...)))))). ( -28.60)
>DroSim_CAF1 43687 97 + 1
GAAACGGCAGUCGAGGGCUGUCGGGAUCAAAGUUGUUAUGACUAUGUGAAAGUGAUGGCUGCG----UAAUGAAAUAAGCUCGGCCAGGCAAAAGCGAUCA
....(((((((.....))))))).((((..((((.....))))..((.....((.((((((.(----(..........)).))))))..))...)))))). ( -28.60)
>DroEre_CAF1 44303 96 + 1
GAAGCGGCAGUUGAGGGCUGUCGGGAUCAAAGUUGUUAUGACUAUGUGA-ACUGAUGGCUGCA----UAAUGAAAUAAGCUCGGCCAGGCAAAAGCGAUCA
((.((.((.(((((((((((((((..(((.((((.....))))...)))-.))))))))).(.----....).......))))))...))....))..)). ( -25.30)
>DroYak_CAF1 69994 101 + 1
GAAGCGGCAGUCGAGUGCUGUCGGGAUCAAAGUUUUUAUGACUAUGCGAAAGUGAAGGCUGCGAAAGUGAUGAAAUAAGCUCGGCCAGGCAAAAGCGAUCA
((.((.((.((((((((((.((........((((.....))))..((....)))).))).((....))..........)))))))...))....))..)). ( -26.50)
>consensus
GAAACGGCAGUCGAGGGCUGUCGGGAUCAAAGUUGUUAUGACUAUGUGAAAGUGAUGGCUGCG____UAAUGAAAUAAGCUCGGCCAGGCAAAAGCGAUCA
....(((((((.....))))))).((((..((((.....))))..((.....((.(((((((................))..)))))..))...)))))). (-22.69 = -22.77 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:27 2006