Locus 8106

Sequence ID 3L_DroMel_CAF1
Location 21,338,278 – 21,338,374
Length 96
Max. P 0.565278
window13249

overview

Window 9

Location 21,338,278 – 21,338,374
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 91.53
Mean single sequence MFE -29.33
Consensus MFE -23.25
Energy contribution -23.75
Covariance contribution 0.50
Combinations/Pair 1.13
Mean z-score -2.36
Structure conservation index 0.79
SVM decision value 0.06
SVM RNA-class probability 0.565278
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21338278 96 + 23771897
AAGCUGAUGACUAAAUGAUGAGGCUAAUGAUGGGCAGAAAAGGGCCAGCGUCUCGGAAAUGUGGAGCAAGUGCGUCAUGUUUCCAGCUCAUUAGAC
...(((((((((.......(((((......(((.(.......).)))..)))))(((((((((..((....))..))))))))))).))))))).. ( -32.00)
>DroSec_CAF1 41153 96 + 1
AAGCUGAUGACUAAAUGAUGAGGCAAAUGAUGGGCAGAAAAGGGCCAGCGUCUCGGGAAUGUGGAGCAAGUGCUUCAUGUUUCCAGCUCAUUAGAC
...(((((((((.......(((((......(((.(.......).)))..)))))(((((((((((((....))))))))))))))).))))))).. ( -35.10)
>DroSim_CAF1 42461 96 + 1
AAGCUGAUGACUAAAUGAUGAGCCAAAUGAUGGGCAGAAAAGGGCCAGCGUCUCGGGAAUGUGGAGCAAGUGCGUCAUGUUUCCAGCUCAUUAGAC
...............((((((((.....(((((((........)))..))))..(((((((((..((....))..))))))))).))))))))... ( -31.00)
>DroEre_CAF1 43119 96 + 1
AAGCUGAUGACUAAAUGAUGAGGCAAGUGAUGGGCAGAAAAGGGCCAGCAUCUCGGGAAUGUGGAGCAGGCGCGUCAUGUUUCCAGCUCAUUAGAC
...(((((((((.......(((....(((...(((........)))..))))))(((((((((..((....))..))))))))))).))))))).. ( -29.90)
>DroYak_CAF1 67541 96 + 1
AUGCUGAUGACUAAAUGAUGAGGCAAAUGAUGGGCAGAAAAGGGCCAGCAUCUCGGGAAUGUGGAGCAAGUACGGCAUGUUUCCAGCUCAUUAGAC
...(((((((((.......(((....(((...(((........)))..))))))(((((((((..(......)..))))))))))).))))))).. ( -24.70)
>DroAna_CAF1 59795 95 + 1
AAGCUGAUGACUAAAUGAUGAGCCAAAUGAUGG-AAGAAAAGGGCCAUCAUUGGGGGAAUUUAGAACAAAUGCGUCAUGUUUCCAGAUCAUUAGAG
...(((((((((..........((((.((((((-..........))))))))))((((((...((.(......)))..)))))))).))))))).. ( -23.30)
>consensus
AAGCUGAUGACUAAAUGAUGAGGCAAAUGAUGGGCAGAAAAGGGCCAGCAUCUCGGGAAUGUGGAGCAAGUGCGUCAUGUUUCCAGCUCAUUAGAC
...(((((((((.......(((....(((.(((.(.......).))).))))))(((((((((..((....))..))))))))))).))))))).. (-23.25 = -23.75 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:26 2006