Locus 8105

Sequence ID 3L_DroMel_CAF1
Location 21,330,573 – 21,330,670
Length 97
Max. P 0.893175
window13248

overview

Window 8

Location 21,330,573 – 21,330,670
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 93.22
Mean single sequence MFE -19.07
Consensus MFE -16.06
Energy contribution -16.42
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 0.84
SVM decision value 0.98
SVM RNA-class probability 0.893175
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21330573 97 + 23771897
GGCUGUGCAAAUGAGUAAUAAUAAAAGCCAAAACUCUUGAGCUGUUAAUGCUCGCGCAUUUAAAUAAA-AACCCCGAAAAGGAGGCACAAAAAAAAAG
...(((((....(((((.((((...((((((.....))).))))))).)))))...............-..(.((.....)).))))))......... ( -19.00)
>DroSec_CAF1 33587 94 + 1
GGCUGUGCAAAUGAGUAAUAAUAAAAGCCAAAACUCUUGAGCUGUUAAUGCUCGCGCAUUUAAAUAAA-AACCCCGAAAAGGCGGCACAAA---AAAG
...(((((....(((((.((((...((((((.....))).))))))).))))).(((.(((.......-........))).))))))))..---.... ( -19.16)
>DroSim_CAF1 34564 94 + 1
GGCUGUGCAAAUGAGUAAUAAUAAAAGCCAAAACUCUUGAGCUGUUAAUGCUCGCGCAUUUAAAUAAA-AACCCCGAAAAGGCGGCACAAA---AAAG
...(((((....(((((.((((...((((((.....))).))))))).))))).(((.(((.......-........))).))))))))..---.... ( -19.16)
>DroEre_CAF1 35623 94 + 1
GACUGUGCAAAUGAGUAUUAAUAAAAGCCAAAACUCUUGAGCUGUUAAUGCUCGCGCAUUAAAAUAAA-AACCCCGAAAAGACGGCAUAAA---AAAG
...(((((....((((((((((...((((((.....))).))))))))))))))))))..........-....(((......)))......---.... ( -20.40)
>DroYak_CAF1 59910 94 + 1
GACUGUGCAAAUGAGUAAUAAUAAAAGCCAAAACUCUUGAGCUGUUAAUGCUCGCGCAUUAAAAUAAA-AACCCCGAAAAGGCGGCAUAAA---AAAG
...(((((....(((((.((((...((((((.....))).))))))).))))))))))..........-..((((.....)).))......---.... ( -18.20)
>DroAna_CAF1 51992 94 + 1
AACUGUGCAAAUGAGCAAUAAUAAAAGCCA-AACUCUUGGGCUGUUAAUGCUCGCGCAUUAAAAUAAAAAACCCCGAAAAGGCGAAAUAAA---AAAA
...(((((....(((((.((((...((((.-........)))))))).)))))))))).............(.((.....)).).......---.... ( -18.50)
>consensus
GACUGUGCAAAUGAGUAAUAAUAAAAGCCAAAACUCUUGAGCUGUUAAUGCUCGCGCAUUAAAAUAAA_AACCCCGAAAAGGCGGCACAAA___AAAG
...(((((....(((((.((((...((((((.....))).))))))).)))))))))).............((((.....)).))............. (-16.06 = -16.42 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:25 2006