| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,329,621 – 21,329,721 |
| Length | 100 |
| Max. P | 0.693122 |
| Location | 21,329,621 – 21,329,721 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.34 |
| Mean single sequence MFE | -34.34 |
| Consensus MFE | -25.98 |
| Energy contribution | -25.78 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.693122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21329621 100 - 23771897 GAUGGGAGGUGGCAGGCGGAUGAAGGGCGUGGCAGGUGACUGAAGGUAGAGGACGACGAAGUGGCUCUCAUAUCUGCAGCGCACUGCGCUGUUUCCGUUG ....(((((..((..(((.........))).(((((((.(((.((((((((..(.((...)).)..))).))))).)))))).))))))..))))).... ( -36.40) >DroSec_CAF1 32668 99 - 1 GAUGGG-GGUGGCAGGUGGAUGGAGGGCGUGGCAGGUGACUGAAGGUGGAGGACGAGGAAGUAGCUCUCAUAUCUGCAGCGCACUGCGCUGUUUCCGUUG (((((.-.(..((....(((((((((((....(((....)))..........((......)).)))))).)))))((((....))))))..)..))))). ( -38.80) >DroSim_CAF1 33614 99 - 1 GAUGGG-GGUGGCAGGUGGGUGGAGGGCGUGGCAGGUGACUGAAGGUAGAGGACGAGGUAGUAGCUCUUAUAUCUGCAGCGCACUGCGCUGUUUCCGUUG (((((.-.(..((.(((((.((.(((((.(..(((....))).).))((((.((......))..))))....))).)).).))))..))..)..))))). ( -36.50) >DroEre_CAF1 34729 86 - 1 G--------------GUGGAAGGAGGGCGUGGCAGGUGACUGAAGGCAGAGGACGAGGAAGUGGCUCUCAUAUCUGCAGCGCACUGCGCUGUUUCCGUUG .--------------..(((((.((.(((((((((....))....(((((.((.(((.......)))))...))))).)).))).)).)).))))).... ( -33.20) >DroYak_CAF1 59095 86 - 1 G--------------GUGGAAGGUGGGCGUGGCAGGUGAAUGAAGGUAGAGGACGAGGAAGUGGCUCUCAUAUCUGCAGCGCACUGCGCUGUUUCCGUUG (--------------(....(((..(((((.((((((..((((..((.....((......)).))..)))))))))).)))).)..).))....)).... ( -26.80) >consensus GAUGGG_GGUGGCAGGUGGAUGGAGGGCGUGGCAGGUGACUGAAGGUAGAGGACGAGGAAGUGGCUCUCAUAUCUGCAGCGCACUGCGCUGUUUCCGUUG ................((((..((.((((..(...(((.(((.((((((((..(.........)..))).))))).)))))).)..)))).))))))... (-25.98 = -25.78 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:24 2006