Locus 8103

Sequence ID 3L_DroMel_CAF1
Location 21,329,224 – 21,329,314
Length 90
Max. P 0.999147
window13245 window13246

overview

Window 5

Location 21,329,224 – 21,329,314
Length 90
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 66.90
Mean single sequence MFE -19.67
Consensus MFE -10.00
Energy contribution -10.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.62
Structure conservation index 0.51
SVM decision value 3.40
SVM RNA-class probability 0.999147
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21329224 90 + 23771897
UGACACCCG---AACGCACAU-GGCAGUGCACUGAAAGAAAAGAAU-GUUAAUAACAAAAAAUGUA--UGAGGGAAAAUAUAAUAUUUAAGGGUGUA
..((((((.---(((((((..-....)))).((........))...-)))............((((--(........)))))........)))))). ( -18.30)
>DroSim_CAF1 33216 72 + 1
UGACACCCG---AACGCACAU-GGCAGUGCACUGAAAGAAAAUAAU-C--------------------GGUCGGAUCAUAUAAUAUUUAAGGGUGUA
..((((((.---...((((..-....)))).((((..((......)-)--------------------..))))................)))))). ( -21.80)
>DroYak_CAF1 58704 92 + 1
UGACACCCUGUCAGUGCACAGGGGCACUCCACUGAAAGAAA-----AAUUCAAAAAAAAAAAGGAACUGGGCGGAAAAUAUUAUAUUUAAGGGUGUA
..(((((((((((((((......)))))....((((.....-----..)))).................)))...(((((...))))).))))))). ( -18.90)
>consensus
UGACACCCG___AACGCACAU_GGCAGUGCACUGAAAGAAAA_AAU_AUU_A_AA_AAAAAA_G_A__GGACGGAAAAUAUAAUAUUUAAGGGUGUA
..((((((.......((((.......)))).(.....)....................................................)))))). (-10.00 = -10.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 21,329,224 – 21,329,314
Length 90
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 66.90
Mean single sequence MFE -17.55
Consensus MFE -9.17
Energy contribution -10.07
Covariance contribution 0.89
Combinations/Pair 1.11
Mean z-score -2.46
Structure conservation index 0.52
SVM decision value 3.29
SVM RNA-class probability 0.998935
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21329224 90 - 23771897
UACACCCUUAAAUAUUAUAUUUUCCCUCA--UACAUUUUUUGUUAUUAAC-AUUCUUUUCUUUCAGUGCACUGCC-AUGUGCGUU---CGGGUGUCA
.((((((......................--.(((.....))).......-................((((....-..))))...---.)))))).. ( -15.40)
>DroSim_CAF1 33216 72 - 1
UACACCCUUAAAUAUUAUAUGAUCCGACC--------------------G-AUUAUUUUCUUUCAGUGCACUGCC-AUGUGCGUU---CGGGUGUCA
.((((((...........((((((.....--------------------)-)))))...........((((....-..))))...---.)))))).. ( -17.80)
>DroYak_CAF1 58704 92 - 1
UACACCCUUAAAUAUAAUAUUUUCCGCCCAGUUCCUUUUUUUUUUUGAAUU-----UUUCUUUCAGUGGAGUGCCCCUGUGCACUGACAGGGUGUCA
.(((((((..............(((((..................((((..-----.....)))))))))((((......))))....))))))).. ( -19.46)
>consensus
UACACCCUUAAAUAUUAUAUUUUCCGACC__U_C_UUUUUU_UU_U_AAC_AUU_UUUUCUUUCAGUGCACUGCC_AUGUGCGUU___CGGGUGUCA
.((((((..(((((...)))))..........................................(((((((.......)))))))....)))))).. ( -9.17 = -10.07 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:23 2006