| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,327,198 – 21,327,293 |
| Length | 95 |
| Max. P | 0.658344 |
| Location | 21,327,198 – 21,327,293 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.57 |
| Mean single sequence MFE | -24.56 |
| Consensus MFE | -13.79 |
| Energy contribution | -16.47 |
| Covariance contribution | 2.68 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21327198 95 + 23771897 UGCAAAUACCCAUUUCGUUUCACCCUUAUCCAUUCAUACUCGUAUGUGCAUGUGGAGCAGGGUGAUUCGAUAUGAUGU--UCUGUGGAGAAAAGAAA .(((((((..(((.(((..(((((((..(((((.((((....)))).....)))))..)))))))..))).))).)))--).)))............ ( -28.60) >DroSec_CAF1 30307 95 + 1 UGCAAAUACCCAUUUCGUUUCACCCUUUUCCAUUCAUACUCGUAUGUCCAUGUGGAGUAGGGUGAUUCAAUAUGAUGU--UCUGUGGAGAAAAGAUA .........((((..(((((((((((.((((((.((((....)))).....)))))).)))))))........)))).--...)))).......... ( -24.90) >DroSim_CAF1 30351 91 + 1 UGCAAAUACCCAUUUCGUUUCACCCUUUUCCAUUCAUACUCGUCUGUCCAUGUGGAGUAGGGUGAUUCAAUAUGAUGU--UCUGUGGAGAAAA---- .........((((..(((((((((((.((((((....((......))....)))))).)))))))........)))).--...))))......---- ( -23.60) >DroEre_CAF1 32248 82 + 1 UGCAAAUCCCCAUUGCGUU---------UCUAUUCAC------AUAUCCACGUUGAGUAGGGUGAGUCGAUAUGAUGUCGUUUCUGGAGAAAGGCAA (((...((.(((..(((..---------((((((.((------.(((((((.....)).))))).)).)))).))...)))...))).))...))). ( -20.10) >DroYak_CAF1 56681 89 + 1 UGCAAAUACCCAUUUCGUUUCGCCCCUUUCCAUUCAC------AUAUCCACGUGGAGUAGGGUGAGUCGAUAUGAUUU--UCUGUGGAGAAAAGAAA ..........(((.(((.(((((((..((((((....------........))))))..))))))).))).))).(((--(((....)))))).... ( -25.60) >consensus UGCAAAUACCCAUUUCGUUUCACCCUUUUCCAUUCAUACUCGUAUGUCCAUGUGGAGUAGGGUGAUUCGAUAUGAUGU__UCUGUGGAGAAAAGAAA ..........(((.(((..(((((((.((((((..................)))))).)))))))..))).)))....................... (-13.79 = -16.47 + 2.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:22 2006