Locus 810

Sequence ID 3L_DroMel_CAF1
Location 2,469,407 – 2,469,513
Length 106
Max. P 0.913652
window1248

overview

Window 8

Location 2,469,407 – 2,469,513
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 82.83
Mean single sequence MFE -28.69
Consensus MFE -14.92
Energy contribution -15.64
Covariance contribution 0.72
Combinations/Pair 1.06
Mean z-score -2.89
Structure conservation index 0.52
SVM decision value 1.09
SVM RNA-class probability 0.913652
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2469407 106 + 23771897
AUUACAUUACGUAUACGUCGUGUAGACUACAUGUCGUAUACGCAA-AAACGUUGCAUACAUUCGGGCAUAUCGGCAACACACGGGCAAAACGGCGUGUUCGAAUCUC
..........(((((((.((((((...)))))).)))))))((((-.....))))....((((((((((..((.................))..))))))))))... ( -31.53)
>DroSec_CAF1 92606 96 + 1
UUUACAUUACGUAUACGUCGUGUAUACUACAUGUAGUAUACACAA-AAACGUUGCAUACUUUCGGGCAUAGCGCCAACACACGG---------CG-GUUCGAAUCUC
..........(((.((((.((((((((((....))))))))))..-..))))))).....(((((((....((((.......))---------))-))))))).... ( -28.70)
>DroSim_CAF1 87078 96 + 1
UUUACAUUACGUAUACGUCGUGUAUACUACAUGUAGUAUACACAA-AAACGUUGCAUACUUUCGGGCAUAGCGCCAACACACGG---------CG-GUUCGAAUCUC
..........(((.((((.((((((((((....))))))))))..-..))))))).....(((((((....((((.......))---------))-))))))).... ( -28.70)
>DroEre_CAF1 92240 104 + 1
UUUACAUUACGUAUACGUCGUGUAA-CUACAUGUUGUAUACAUAAAAAAUGUUGCAUACACUCAGGCAUAGCGCCACCACUCGCGCAAAACGGCGUG--UGUCUCUC
.((((((.(((....))).))))))-.((((((((((...........(((((...........))))).((((........))))...))))))))--))...... ( -25.40)
>DroYak_CAF1 90662 106 + 1
UUUACAUUACGUAUACGUCCUGUAUUCUACAUGUCGUAUACACAA-AAACGUUGCAUACAUUCAGGCAUAGCGCCACCACUCGCGUAAAACGGCGUAUGUGACUCUC
..........(((((((.(.((((...)))).).)))))))....-....((..(((((.....(((.....))).......((........)))))))..)).... ( -29.10)
>consensus
UUUACAUUACGUAUACGUCGUGUAUACUACAUGUAGUAUACACAA_AAACGUUGCAUACAUUCGGGCAUAGCGCCAACACACGGG_AAAACGGCGUGUUCGAAUCUC
..........(((((((.((((((...)))))).))))))).......................(((.....)))................................ (-14.92 = -15.64 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:46 2006