Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,315,248 – 21,315,392 |
Length | 144 |
Max. P | 0.853498 |
Location | 21,315,248 – 21,315,355 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.85 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -26.92 |
Energy contribution | -26.73 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.31 |
Mean z-score | -2.84 |
Structure conservation index | 0.78 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21315248 107 + 23771897 UUUAUAA---AUACAGCCGGCAGCGGCAGACAGAUGGCGUCAUUCGUUUGCAUUGAAUGUGGUCAGGAAUUU-UAGUA---------UUUUUUCCUCAGACCAUUUGCAGGUUGACUGAG .......---...(((((.((((..((((((..(((....)))..)))))).......(((((((((((...-.....---------....)))))..)))))))))).)))))...... ( -32.90) >DroSec_CAF1 18361 107 + 1 UUUAUAA---AUACAGCCGGCAGCGGCAGACAGAUGGCGUCAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU-UAGUA---------UUCUUUCCUCAGACCAUUUGCAGGUUGACUGAG .......---...(((((.((((..(((((((((((....))))))))))).......(((((((((((...-.....---------....)))))..)))))))))).)))))...... ( -36.50) >DroSim_CAF1 18432 107 + 1 UUUAUAA---AUACAGCCGGCAGCGGCAGACAGAUGGCGUCAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU-UAGUA---------UUCUUUCCUCAGACCAUUUGCAGGUUGACUGAG .......---...(((((.((((..(((((((((((....))))))))))).......(((((((((((...-.....---------....)))))..)))))))))).)))))...... ( -36.50) >DroEre_CAF1 20365 106 + 1 UUUAUAA---AUACGGUCGGCAGAGGCAGACAGAUGGCGUCAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU--AGUA---------UUCUUUUUUCCGACCAUUUGCAGGUUGACUGAG .......---...((((((((....(((((((((((....))))))))))).(((...((((((.((((...--((..---------..))...))))))))))...))))))))))).. ( -40.30) >DroYak_CAF1 44583 106 + 1 UUUAUAA---AUACGGUCGCCAGCGGCAGACAGAUGGCGUCAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU-CAGUA---------UUCUUU-UUCCGACCAUUUGCAGGUUGACUGAG .......---...((((((((.((((((((((((((....))))))))))).......((((((.((((...-.((..---------..))..-)))))))))).))).)).)))))).. ( -37.50) >DroPer_CAF1 34381 118 + 1 UUUAUAAAAAAUAUGGCCAGCAGACGUUG-UGGAUUGCGUCAUUUGUUUGCAUUGAAUGUGGUCAAGAUAUUCUGAUGCUUUUCUGUUGCUUUCUUUGGACCAUUUUU-CGUUGACUAAG ........(((.((((((((.(((.((.(-..((..((((((((((.(..(((...)))..).))))......))))))...))..).))..))))))).)))).)))-........... ( -24.70) >consensus UUUAUAA___AUACAGCCGGCAGCGGCAGACAGAUGGCGUCAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU_UAGUA_________UUCUUUCCUCAGACCAUUUGCAGGUUGACUGAG .............(((.((((....(((((((((((....))))))))))).(((...(((((((((((......................)))))..))))))...))))))).))).. (-26.92 = -26.73 + -0.19)
Location | 21,315,285 – 21,315,392 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.39 |
Mean single sequence MFE | -27.79 |
Consensus MFE | -18.82 |
Energy contribution | -19.43 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.21 |
Mean z-score | -1.92 |
Structure conservation index | 0.68 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21315285 107 + 23771897 CAUUCGUUUGCAUUGAAUGUGGUCAGGAAUUU-UAGUA---------UUUUUUCCUCAGACCAUUUGCAGGUUGACUGAGCCGCAG--AAGUAAACAGAAAAUCUGCUGGCAACACUUU .....(((.((.(((...(((((((((((...-.....---------....)))))..))))))...))))).)))...(((((((--(.............))))).)))........ ( -27.82) >DroSec_CAF1 18398 107 + 1 CAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU-UAGUA---------UUCUUUCCUCAGACCAUUUGCAGGUUGACUGAGCCGCAG--AAGUAAACAGAAAAUCUGCUGGCAACAAUUU ..(((((((((........((((((((((...-.....---------....)))))..)))))(((((.((((.....))))))))--).)))))))))........((....)).... ( -29.40) >DroSim_CAF1 18469 107 + 1 CAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU-UAGUA---------UUCUUUCCUCAGACCAUUUGCAGGUUGACUGAGCCGCAG--AAGUAAACAGAAAAUCUGCUGGCAACAAAUU ..(((((((((........((((((((((...-.....---------....)))))..)))))(((((.((((.....))))))))--).)))))))))........((....)).... ( -29.40) >DroEre_CAF1 20402 94 + 1 CAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU--AGUA---------UUCUUUUUUCCGACCAUUUGCAGGUUGACUGAGCCGCAG--AAGUAAACA------------GCAACACUUU ...((((((((........(((((.((((...--((..---------..))...)))))))))(((((.((((.....))))))))--).)))))))------------)......... ( -27.30) >DroYak_CAF1 44620 106 + 1 CAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU-CAGUA---------UUCUUU-UUCCGACCAUUUGCAGGUUGACUGAGCUGCAG--AAGUAAACAGAAAAUCUGCUAGCAACACUUU ..(((((((((........(((((.((((...-.((..---------..))..-)))))))))(((((((.((....)).))))))--).))))))))).................... ( -28.80) >DroPer_CAF1 34420 115 + 1 CAUUUGUUUGCAUUGAAUGUGGUCAAGAUAUUCUGAUGCUUUUCUGUUGCUUUCUUUGGACCAUUUUU-CGUUGACUAAGCCGCAAAAAAGUAAACA---AUUCUGCUGGCAACAUUUU ...((((..(((..((((((.......))))))...(((((((.(((.((((((..((((......))-))..))..)))).))).)))))))....---....)))..))))...... ( -24.00) >consensus CAUUUGUUUGCAUUGAAUGUGGUCAGGAAUUU_UAGUA_________UUCUUUCCUCAGACCAUUUGCAGGUUGACUGAGCCGCAG__AAGUAAACAGAAAAUCUGCUGGCAACACUUU ..(((((((((.......(((((((((((......................)))))..))))))((((.((((.....))))))))....))))))))).................... (-18.82 = -19.43 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:17 2006