Locus 8097

Sequence ID 3L_DroMel_CAF1
Location 21,294,275 – 21,294,386
Length 111
Max. P 0.508854
window13236

overview

Window 6

Location 21,294,275 – 21,294,386
Length 111
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.37
Mean single sequence MFE -38.98
Consensus MFE -31.62
Energy contribution -30.85
Covariance contribution -0.77
Combinations/Pair 1.41
Mean z-score -1.14
Structure conservation index 0.81
SVM decision value -0.05
SVM RNA-class probability 0.508854
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21294275 111 - 23771897
-------CAAACCAAAACUCACUUGGUGUCCGAGCUGGCCAAUCUCUGGCGUUGGUGCGUCGGAAUGCAGGUCUGUUUGGGUGCUGGCUUCAGCUCCAGAGCGAAGUCACUCUCGUUG
-------........(((......((..(((((((.((((....((((((((....)))))))).....)))).)))))))..))((((((.(((....)))))))))......))). ( -41.20)
>DroSec_CAF1 10425 111 - 1
-------CAAACAAAAACUCACUUGGUGUCUGAGCUGGCCAAUCUCUGGCGUUGGUGCUCCGGAAUGCAGGUCCGUUUGGGUGCUGGCUUCAGCUCCAGAGCGAAGUCACUUUCGUUG
-------..(((.(((....((((.((.(((((((((((((.....))))((..(..(((((((.......))))...)))..)..))..))))).)))))).))))...))).))). ( -38.10)
>DroSim_CAF1 10465 111 - 1
-------CAAACAAAAACUCACUUGGUGUCUGAGCUGGCCAAUCUCUGGCGUUGGUGCUCCGGAAUGCAGGUCCGUUUGGGUGCUGGCUUCAGCUCCAGAGCGAAGUCACUUUCGUUG
-------..(((.(((....((((.((.(((((((((((((.....))))((..(..(((((((.......))))...)))..)..))..))))).)))))).))))...))).))). ( -38.10)
>DroEre_CAF1 12480 101 - 1
-----------------CUCACCUCGUGUCCGAGCUGGCCAAUCUCUGGCGUUGGUGCUCCGGAAUGCAGGUCUGCUUGGGUGCUGACUUCAGCUCCAGAGCAAAGUCACUUUCGGUG
-----------------..((((..(..(((((((.((((....(((((.((....)).))))).....)))).)))))))..)((((((..(((....))).)))))).....)))) ( -40.80)
>DroYak_CAF1 36468 118 - 1
UUUCUUUCAAACCUAAACUCACCUGGUGUCCGAGCUGGCCAAUCUCUGGCGCUGGUGCUCCGGAAUGCAGGUCUGUUUGGGUGCUGGCUUCAGCUCCAGAGCAAAGUCACUUUCCGUG
..........((((((((..(((((...(((((((.(((((.....)))).)....))).))))...)))))..))))))))..((((((..(((....))).))))))......... ( -40.90)
>DroAna_CAF1 28235 102 - 1
----------------UCAUACCUUGUGGCCGAGUUGACCAUCCGUUGCCGUUGAUGGAGAGGAAUACAGGUCUGCUUGGGAGUCGGCUUCAGUUCCAGGGCGAAGUCACUUUCGGUG
----------------...((((......((((((.((((.((((((......))))))..(.....).)))).))))))((((.((((((.(((....)))))))))))))..)))) ( -34.80)
>consensus
_______CAAAC_AAAACUCACCUGGUGUCCGAGCUGGCCAAUCUCUGGCGUUGGUGCUCCGGAAUGCAGGUCUGUUUGGGUGCUGGCUUCAGCUCCAGAGCGAAGUCACUUUCGGUG
........................(((..((((((.((((....(((((.((....)).))))).....)))).))))))..)))((((((.(((....))))))))).......... (-31.62 = -30.85 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:14 2006