| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,283,570 – 21,283,685 |
| Length | 115 |
| Max. P | 0.646450 |
| Location | 21,283,570 – 21,283,685 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.07 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -19.88 |
| Energy contribution | -20.32 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21283570 115 + 23771897 GUUGAUAACUGGCCAUAUGUUACCCAAUCCAUCGCCAGCCAAGACUAUGAAUUCACUGAAUAUUUCAAUUGGCUGG----ACAUAUCCUUACGCAAUUUGGGU-UACACUAAGUGCGCCA ..........((((((.(((.((((((.......((((((((.....((((............)))).))))))))----.................))))))-.)))....))).))). ( -28.35) >DroSec_CAF1 41827 120 + 1 GCUGAUAACUGGCCAUAUGUUACCCAAUCCAUCGCUAGCCAAGACUAUAAAUGGACUAAAUAUUUCAAUUGGCUGGCUGCACAUAUCCUUACUCUAUCUGGGUUUUAACUAUGUGCCCCU (((.......)))....................(((((((((......(((((.......)))))...))))))))).(((((((.....((((.....))))......))))))).... ( -27.00) >DroSim_CAF1 44088 115 + 1 GCUGAUAACUGGCCAUAUGUUACCCAAUCCAUCGCCAGCCAAGACUAUAAAUGGACUAAAUAUUUCAAUUGGCUGG----ACAUAUCCUUACUCUAUCUGGGU-UAAACUAUGUGCCCCU ..........(((((((.((((((((.......(((((((((......(((((.......)))))...))))))))----.).((....)).......)))))-..))))))).)))... ( -26.40) >DroEre_CAF1 43110 115 + 1 GCUGAUAACUGGCCAUAUGUUACCCAACCCAUCGCCAGCCAAGACUAUUAAUGCACUGAAUAUUUCAAUUGGCUGG----ACAUAUCCUUACUCUAUUUGGGU-AAAACUAUGUGCUCCU ..........(((((((..((((((((......(((((((((..........................))))))))----.).((....))......))))))-))...)))).)))... ( -25.77) >consensus GCUGAUAACUGGCCAUAUGUUACCCAAUCCAUCGCCAGCCAAGACUAUAAAUGCACUAAAUAUUUCAAUUGGCUGG____ACAUAUCCUUACUCUAUCUGGGU_UAAACUAUGUGCCCCU ..........(((((((.((((((((........((((((((..........................)))))))).......((....)).......)))))...))))))).)))... (-19.88 = -20.32 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:13 2006